RyanWangZf / BioBridge
ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
☆65Updated 9 months ago
Alternatives and similar repositories for BioBridge:
Users that are interested in BioBridge are comparing it to the libraries listed below
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆21Updated last week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆32Updated 2 months ago
- ☆33Updated last year
- ☆12Updated 2 years ago
- Code repository to create the MIMIC-CDM Dataset.☆26Updated 2 weeks ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆146Updated last year
- Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries☆42Updated last year
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆27Updated 8 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆40Updated 11 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆193Updated 3 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆93Updated last year
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆103Updated 5 months ago
- A collection of resources related with Knowledge-augmented Graph Machine Learning for Drug Discovery.☆20Updated 7 months ago
- [IJCAI 2023] Graph Propagation Transformer for Graph Representation Learning☆48Updated last year
- Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Network. Nature Computational Science. 20…☆25Updated last year
- Code implementation for paper "Can Large Language Models Empower Molecular Property Prediction?"☆38Updated last year
- ☆13Updated this week
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025☆52Updated last month
- ☆49Updated 8 months ago
- ☆12Updated 4 months ago
- KDD 2024 | FlexCare: Leveraging Cross-Task Synergy for Flexible Multimodal Healthcare Prediction☆11Updated 5 months ago
- Must-read papers on NLP for science.☆58Updated last year
- ☆15Updated 2 years ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆117Updated 11 months ago
- The code for "Learning Molecular Representation in a Cell"☆19Updated 4 months ago
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆84Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆86Updated last year
- PDD: Awesome Phenotypic Drug Discovery☆21Updated this week