RyanWangZf / BioBridgeLinks
ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
☆74Updated last year
Alternatives and similar repositories for BioBridge
Users that are interested in BioBridge are comparing it to the libraries listed below
Sorting:
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆37Updated 6 months ago
- ☆12Updated 2 years ago
- ☆33Updated 2 years ago
- A collection of resources related with Knowledge-augmented Graph Machine Learning for Drug Discovery.☆20Updated 11 months ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆114Updated 9 months ago
- Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Network. Nature Computational Science. 20…☆28Updated last year
- [IJCAI 2023] Graph Propagation Transformer for Graph Representation Learning☆49Updated last year
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Updated last year
- Code repository to create the MIMIC-CDM Dataset.☆34Updated 4 months ago
- Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries☆45Updated 3 months ago
- ☆50Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆147Updated 3 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆24Updated 3 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆47Updated last year
- ☆46Updated last year
- ☆32Updated 2 months ago
- Must-read papers on NLP for science.☆58Updated 2 years ago
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆10Updated 3 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆214Updated 2 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆97Updated last year
- ☆16Updated 8 months ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆125Updated last year
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆63Updated 3 months ago
- Gene expression time-series extrapolation for heterogeneous data☆17Updated 2 years ago
- ☆60Updated 5 months ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Updated last year
- KDD 2024 | FlexCare: Leveraging Cross-Task Synergy for Flexible Multimodal Healthcare Prediction☆14Updated 9 months ago
- InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)☆47Updated 6 months ago
- BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science☆18Updated 8 months ago