PharMolix / SToFMLinks
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".
☆43Updated 5 months ago
Alternatives and similar repositories for SToFM
Users that are interested in SToFM are comparing it to the libraries listed below
Sorting:
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆150Updated 2 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆65Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆46Updated 9 months ago
- A model developed for the generation of scRNA-seq data☆85Updated 3 weeks ago
- ☆25Updated last year
- Single-cell spatial elucidation through image-augmented graph transformer☆34Updated 2 years ago
- ☆33Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Updated last year
- Single-Cell Multimodal Prediction via Transformer☆28Updated 2 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- ☆127Updated last year
- ☆347Updated 2 years ago
- Single-Cell (Perturbation) Model Library☆91Updated 3 weeks ago
- ☆33Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆362Updated this week
- ☆390Updated 2 months ago
- ☆28Updated 10 months ago
- Her2 Breast Cancer Project☆93Updated 3 years ago
- Awesome-AI-Virtual-Cell☆167Updated last week
- a unified single-cell data integration framework by optimal transport☆36Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆332Updated last year
- ☆39Updated 4 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆242Updated 11 months ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆41Updated last month
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- ☆402Updated 3 weeks ago
- ☆158Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆255Updated this week
- ☆92Updated 5 months ago