HajkD / LTRpred
De novo annotation of young retrotransposons
☆48Updated 3 years ago
Alternatives and similar repositories for LTRpred:
Users that are interested in LTRpred are comparing it to the libraries listed below
- ☆43Updated 8 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 11 months ago
- ☆24Updated last month
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated last month
- A pipeline for isoseq☆23Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆40Updated this week
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 4 months ago
- read and analyse RepeatMasker output☆24Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Error correction of ONT transcript reads☆58Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆44Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year