HajkD / LTRpred
De novo annotation of young retrotransposons
☆48Updated 2 years ago
Alternatives and similar repositories for LTRpred:
Users that are interested in LTRpred are comparing it to the libraries listed below
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- perSVade: personalized Structural Variation detection☆38Updated 3 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆43Updated 8 years ago
- Synteny Imager☆60Updated 6 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 5 months ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Error correction of ONT transcript reads☆59Updated last year
- Evolutionary Transcriptomics with R☆42Updated last week
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆24Updated last month
- web documentation for Trinotate☆48Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆61Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆53Updated last month
- Genome Annotation Without Nightmares☆43Updated last month
- ☆76Updated 3 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago