HajkD / LTRpred
De novo annotation of young retrotransposons
☆46Updated 2 years ago
Alternatives and similar repositories for LTRpred:
Users that are interested in LTRpred are comparing it to the libraries listed below
- ☆24Updated this week
- ☆43Updated 8 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last month
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- ☆74Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 8 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆34Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated last month
- perSVade: personalized Structural Variation detection☆38Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated 10 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated this week
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 weeks ago
- Genome Annotation Without Nightmares☆43Updated last year
- Synteny Imager☆60Updated 4 months ago
- A tool for evaluate long-read de novo assembly results☆42Updated 4 months ago