Alternatives and similar repositories for genomics-research

Users that are interested in genomics-research are comparing it to the libraries listed below

• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆107Updated 5 months ago
• kipoi / models
  Model zoo for genomics
  ☆168Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 3 months ago
• GenoML / genoml2
  GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
  ☆33Updated 2 months ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆130Updated 2 years ago
• Christensen-Lab-Dartmouth / MethylNet
  Modular framework for deep learning predictions on methylation data.
  ☆54Updated 5 years ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆156Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆80Updated 3 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆239Updated last year
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆41Updated last month
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆124Updated 2 years ago
• joanaapa / Distillation-DNABERT-Promoter
  Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.
  ☆24Updated 2 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆57Updated 3 weeks ago
• BIMSBbioinfo / compgen2021
  ☆77Updated 3 years ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆60Updated last week
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆55Updated 11 months ago
• gdewael / cpg-transformer
  CpG Transformer for imputation of single-cell methylomes
  ☆38Updated last year
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆46Updated last year
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 11 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated 2 weeks ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated 10 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆258Updated 3 years ago
• cantinilab / momix-notebook
  ☆67Updated last year
• lcamillo / CpGPT
  CpGPT: a Foundation Model for DNA Methylation.
  ☆50Updated this week
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆81Updated 10 months ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆161Updated last year
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year