Alternatives and similar repositories for trifast

Users that are interested in trifast are comparing it to the libraries listed below

• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year
• HannesStark / FlowSite
  Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …
  ☆103Updated last year
• alexechu / protpardelle
  ☆64Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆98Updated 2 years ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆58Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆85Updated last year
• cch1999 / posecheck
  Pose checks for 3D Structure-based Drug Design methods
  ☆92Updated last year
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆55Updated 2 years ago
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆88Updated 3 months ago
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆139Updated last year
• wengong-jin / DSMBind
  ☆96Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆53Updated last month
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆146Updated 9 months ago
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆40Updated 5 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆143Updated last year
• flagshippioneering / flash_ipa
  [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
  ☆41Updated 2 months ago
• Croydon-Brixton / pymol-remote
  Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)
  ☆36Updated 11 months ago
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆73Updated 2 years ago
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆28Updated last year
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆115Updated 7 months ago
• learningmatter-mit / GenZProt
  ☆27Updated last year
• wengong-jin / abdockgen
  ☆108Updated 2 years ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆79Updated last year
• escalante-bio / mosaic
  composite-objective protein design
  ☆134Updated last month
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆116Updated 3 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆126Updated 3 years ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆72Updated last month
• jozhang97 / ism
  ☆35Updated 9 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆132Updated 2 months ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆103Updated last year