[Nature Biotech '25] Disclose the evaluation limitations for cell embeddings.
☆116Jun 15, 2025Updated 8 months ago
Alternatives and similar repositories for Islander
Users that are interested in Islander are comparing it to the libraries listed below
Sorting:
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆16Dec 1, 2025Updated 3 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆48Feb 20, 2026Updated last week
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- ☆19Mar 8, 2023Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 5 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- ☆11May 10, 2025Updated 9 months ago
- ☆11Nov 12, 2025Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆13Feb 12, 2026Updated 2 weeks ago
- ☆12Nov 20, 2023Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake …☆15Aug 27, 2025Updated 6 months ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- ☆13Jan 24, 2024Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆16Apr 18, 2023Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- ☆40Jan 26, 2026Updated last month
- ☆19Mar 31, 2023Updated 2 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- ☆60Apr 5, 2024Updated last year
- ☆16May 23, 2022Updated 3 years ago
- ☆91Aug 12, 2024Updated last year
- ☆13Aug 9, 2022Updated 3 years ago
- ☆17Jul 12, 2024Updated last year
- ☆17Apr 27, 2023Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year