[Nature Biotech '25] Stress-testing the metrics for cell foundation models.
☆87Jun 15, 2025Updated last year
Alternatives and similar repositories for Islander
Users that are interested in Islander are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 9 months ago
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 9 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated 3 months ago
- A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake …☆17Aug 27, 2025Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 5 months ago
- ☆15Jan 24, 2024Updated 2 years ago
- ☆16Sep 1, 2023Updated 3 years ago
- 🚀🚀 Efficient implementations of Native Sparse Attention☆603Updated this week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- ☆12Apr 25, 2026Updated 4 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- ☆18May 30, 2022Updated 4 years ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆27Feb 6, 2025Updated last year
- ☆102Aug 12, 2024Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 4 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆63Apr 5, 2024Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 17, 2024Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆18Apr 20, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆44Jan 12, 2026Updated 8 months ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 3 weeks ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated last month
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆29Feb 26, 2026Updated 6 months ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆80Updated this week