GATB / short_read_connector
Short Read Connector (SRC)
☆9Updated 2 years ago
Alternatives and similar repositories for short_read_connector
Users that are interested in short_read_connector are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆15Updated 4 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- ☆14Updated 9 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆34Updated 2 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ☆30Updated last year
- Indel-aware consensus for aligned BAM☆21Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- ☆28Updated last month
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- ☆25Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A succinct colored dBG representation☆12Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- ☆16Updated 7 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated 11 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Pipeline for analyzing (rare) mutations in metagenome-assembled genomes☆11Updated last month
- StriDe Assembler☆25Updated 7 years ago