Czh3 / NGSTools
Next-Generation Sequencing(NGS) toolkits.
☆45Updated 8 years ago
Alternatives and similar repositories for NGSTools:
Users that are interested in NGSTools are comparing it to the libraries listed below
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆78Updated 11 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 6 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Scripts for next generation sequencing☆48Updated 5 years ago
- ☆89Updated 4 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆46Updated 8 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆96Updated 6 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆80Updated 2 weeks ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Materials for Spring 2018 Applied Genomics Course☆78Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year