MonashBioinformaticsPlatform / bio-ansible
Proof of concept to use ansible + Lmod to deploy a bioinformatics server
☆23Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for bio-ansible
- RNAsik - more than just a pipeline☆13Updated 9 months ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- ☆23Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆19Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Docker image of JBrowse Genome Browser☆14Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 7 months ago
- ☆13Updated 7 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Updated 8 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 5 years ago
- R package to quickly obtain count vectors from indexed bam files☆13Updated 3 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Updated 9 years ago
- Snakemake skeleton - Build workflows with Snakemake☆16Updated 6 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- BED QC tool (in the making)☆15Updated 2 years ago
- ☆11Updated 6 years ago