MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
β472Jul 18, 2024Updated last year
Alternatives and similar repositories for MIMIC_Extract
Users that are interested in MIMIC_Extract are comparing it to the libraries listed below
Sorting:
- Python suite to construct benchmark machine learning datasets from the MIMIC-III π clinical database.β872Apr 16, 2023Updated 2 years ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databasesβ3,135Nov 10, 2025Updated 3 months ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β99Jun 25, 2025Updated 8 months ago
- β131Sep 27, 2024Updated last year
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-codeβ294Jun 17, 2021Updated 4 years ago
- Evaluation of the Sepsis-3 guidelines in MIMIC-IIIβ199Jun 21, 2022Updated 3 years ago
- Replication of the arterial line study in MIMIC-IVβ76Oct 19, 2021Updated 4 years ago
- Code and website related to the eICU Collaborative Research Databaseβ381Dec 19, 2024Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β24Jul 12, 2022Updated 3 years ago
- Repository for the paper describing MIMIC-IIIβ84May 24, 2016Updated 9 years ago
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical evenβ¦β77Apr 25, 2024Updated last year
- Mapping the MIMIC-III database to the OMOP schemaβ144Mar 17, 2024Updated last year
- Sepsis cohort from MIMIC datasetβ127Jul 6, 2023Updated 2 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.β14Aug 7, 2019Updated 6 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"β19May 16, 2019Updated 6 years ago
- A customizable pipeline for multimodal data extraction from MIMIC-IV!β299Feb 16, 2026Updated last week
- A python package for removing duplicate text in clinical notes or other documentsβ39Aug 6, 2020Updated 5 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatlyβ¦β30Nov 18, 2017Updated 8 years ago
- circEWS public codeβ76Oct 30, 2024Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β88Oct 28, 2022Updated 3 years ago
- A Python library to load and analyze the MIMIC III Critical Care Databaseβ30Dec 8, 2022Updated 3 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β198Jan 11, 2026Updated last month
- Introduction to MIMIC-III, the Critical Care Databaseβ86Jun 12, 2017Updated 8 years ago
- Sepsis Prediction on MIMICβ71Nov 10, 2021Updated 4 years ago
- Real time mortality prediction in the MIMIC-III databaseβ54Apr 16, 2018Updated 7 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.β37Apr 11, 2023Updated 2 years ago
- β12Apr 3, 2022Updated 3 years ago
- MIMIC III v1.4 analysis. Mortality prediction through Deep Learning.β25Dec 9, 2019Updated 6 years ago
- Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.β19Jul 6, 2020Updated 5 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β435Oct 17, 2022Updated 3 years ago
- Code for "Trajectory Inspection: A Method for Iterative Clinician-Driven Design of Reinforcement Learning Studies"β16Oct 15, 2020Updated 5 years ago
- MiME Repositoryβ105Nov 14, 2019Updated 6 years ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β83Apr 17, 2025Updated 10 months ago
- Learning representations for RL in Healthcare under a POMDP assumptionβ57Jan 21, 2025Updated last year
- β27Dec 31, 2019Updated 6 years ago
- Pipeline of Data Extraction, Preprocessing, Representation, and Training for MIMIC-IIIβ17Nov 16, 2020Updated 5 years ago
- A Deep Learning Python Toolkit for Healthcare Applications.β1,449Updated this week
- β41Jun 5, 2022Updated 3 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β142Aug 30, 2025Updated 6 months ago