MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
β476Jul 18, 2024Updated last year
Alternatives and similar repositories for MIMIC_Extract
Users that are interested in MIMIC_Extract are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python suite to construct benchmark machine learning datasets from the MIMIC-III π clinical database.β881Apr 16, 2023Updated 3 years ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databasesβ3,218Apr 14, 2026Updated last month
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β100Mar 19, 2026Updated 2 months ago
- β131Sep 27, 2024Updated last year
- Evaluation of the Sepsis-3 guidelines in MIMIC-IIIβ200Jun 21, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β24Jul 12, 2022Updated 3 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-codeβ300Jun 17, 2021Updated 4 years ago
- Replication of the arterial line study in MIMIC-IVβ76Oct 19, 2021Updated 4 years ago
- Sepsis cohort from MIMIC datasetβ129Jul 6, 2023Updated 2 years ago
- Sepsis Prediction on MIMICβ71Nov 10, 2021Updated 4 years ago
- Repository for the paper describing MIMIC-IIIβ83May 24, 2016Updated 9 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"β19May 16, 2019Updated 7 years ago
- Code and website related to the eICU Collaborative Research Databaseβ396Dec 19, 2024Updated last year
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical evenβ¦β77Apr 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A customizable pipeline for multimodal data extraction from MIMIC-IV!β325Mar 10, 2026Updated 2 months ago
- A Python library to load and analyze the MIMIC III Critical Care Databaseβ30Dec 8, 2022Updated 3 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β92Oct 28, 2022Updated 3 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.β15Aug 7, 2019Updated 6 years ago
- A python package for removing duplicate text in clinical notes or other documentsβ39Aug 6, 2020Updated 5 years ago
- Mapping the MIMIC-III database to the OMOP schemaβ146Mar 17, 2024Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β206Jan 11, 2026Updated 4 months ago
- circEWS public codeβ78Oct 30, 2024Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatlyβ¦β30Nov 18, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MIMIC III v1.4 analysis. Mortality prediction through Deep Learning.β25Dec 9, 2019Updated 6 years ago
- Code for "Trajectory Inspection: A Method for Iterative Clinician-Driven Design of Reinforcement Learning Studies"β16Oct 15, 2020Updated 5 years ago
- Real time mortality prediction in the MIMIC-III databaseβ54Apr 16, 2018Updated 8 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.β37Apr 11, 2023Updated 3 years ago
- PhysioNet 2019 Challenge: Early Prediction of Sepsis from Clinical Dataβ12May 19, 2019Updated 7 years ago
- β27Dec 31, 2019Updated 6 years ago
- Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.β18Jul 6, 2020Updated 5 years ago
- Pipeline of Data Extraction, Preprocessing, Representation, and Training for MIMIC-IIIβ18Nov 16, 2020Updated 5 years ago
- A Deep Learning Python Toolkit for Healthcare Applications.β1,587Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Introduction to MIMIC-III, the Critical Care Databaseβ87Jun 12, 2017Updated 8 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β437Oct 17, 2022Updated 3 years ago
- MiME Repositoryβ105Nov 14, 2019Updated 6 years ago
- Learning representations for RL in Healthcare under a POMDP assumptionβ58Jan 21, 2025Updated last year
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β84Apr 17, 2025Updated last year
- MIMIC-III Time Series Modelsβ32Sep 21, 2019Updated 6 years ago
- repository for Publicly Available Clinical BERT Embeddingsβ765Aug 25, 2020Updated 5 years ago