MLforHealth / MIMIC_ExtractLinks
MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
☆459Updated last year
Alternatives and similar repositories for MIMIC_Extract
Users that are interested in MIMIC_Extract are comparing it to the libraries listed below
Sorting:
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆290Updated 4 years ago
- Evaluation of the Sepsis-3 guidelines in MIMIC-III☆197Updated 3 years ago
- Code and website related to the eICU Collaborative Research Database☆366Updated 11 months ago
- Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.☆864Updated 2 years ago
- A customizable pipeline for data extraction from MIMIC-IV; now multimodal!☆284Updated 3 weeks ago
- ☆130Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆191Updated last month
- ☆227Updated 4 years ago
- Sepsis cohort from MIMIC dataset☆124Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 5 months ago
- Sepsis Prediction on MIMIC☆71Updated 4 years ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanism☆224Updated 8 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆425Updated 3 years ago
- circEWS public code☆74Updated last year
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical even…☆77Updated last year
- VentAI source code☆28Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆86Updated this week
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- OMOP standardization pipeline for ICU databases☆44Updated 9 months ago
- Med-BERT, contextualized embedding model for structured EHR data☆308Updated last year
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆82Updated 7 months ago
- MiME Repository☆105Updated 6 years ago
- Replication of the arterial line study in MIMIC-IV☆75Updated 4 years ago
- ☆107Updated 4 years ago
- ☆13Updated 3 years ago