MLforHealth / MIMIC_Extract
MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
☆424Updated 6 months ago
Alternatives and similar repositories for MIMIC_Extract:
Users that are interested in MIMIC_Extract are comparing it to the libraries listed below
- Evaluation of the Sepsis-3 guidelines in MIMIC-III☆191Updated 2 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆269Updated 3 years ago
- A customizable pipeline for data extraction from MIMIC-IV.☆199Updated last year
- Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.☆815Updated last year
- ☆127Updated 3 months ago
- Code and website related to the eICU Collaborative Research Database☆330Updated last month
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 7 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆161Updated this week
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical even…☆77Updated 8 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- Sepsis cohort from MIMIC dataset☆98Updated last year
- ☆222Updated 3 years ago
- source codes based on PyTorch to analyze EHR☆132Updated 11 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆58Updated last month
- RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanism☆213Updated 7 years ago
- Sepsis Prediction on MIMIC☆69Updated 3 years ago
- circEWS public code☆65Updated 2 months ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆419Updated 2 years ago
- Real time mortality prediction in the MIMIC-III database☆53Updated 6 years ago
- Replication of the arterial line study in MIMIC-IV☆66Updated 3 years ago
- Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series☆125Updated 2 years ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆76Updated last year
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆245Updated 4 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆52Updated last year
- Installing MIMIC-IV in a local Postgres database☆39Updated 3 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆278Updated 11 months ago
- Repository for the paper describing MIMIC-III☆76Updated 8 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆389Updated 2 years ago
- ☆46Updated last month
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆71Updated 2 years ago