jamesmullenbach / caml-mimic
multilabel classification of EHR notes
☆286Updated 4 years ago
Alternatives and similar repositories for caml-mimic:
Users that are interested in caml-mimic are comparing it to the libraries listed below
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆413Updated 2 years ago
- repository for Publicly Available Clinical BERT Embeddings☆711Updated 4 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆247Updated 4 years ago
- Python wraper for MetaMap☆171Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆293Updated 3 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- ☆69Updated 3 years ago
- PyTorch Implementation of BioBERT☆325Updated last year
- ☆98Updated 3 years ago
- ☆226Updated 7 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- Predicting ICD Codes from Clinical Notes☆60Updated 4 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- MiME Repository☆105Updated 5 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆590Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆93Updated 8 months ago
- Multi-Filter Residual Convolutional Neural Network for Text Classification☆47Updated 4 years ago
- Pre-training of Graph Augmented Transformers for Medication Recommendation☆120Updated 5 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- BioBert Pytorch☆116Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆571Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆282Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- ☆222Updated 3 years ago
- ☆151Updated last year
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- Blog post on Medium☆49Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year