jamesmullenbach / caml-mimicLinks
multilabel classification of EHR notes
☆289Updated 5 years ago
Alternatives and similar repositories for caml-mimic
Users that are interested in caml-mimic are comparing it to the libraries listed below
Sorting:
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆424Updated 2 years ago
- repository for Publicly Available Clinical BERT Embeddings☆729Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆71Updated 3 years ago
- Python wraper for MetaMap☆174Updated 5 years ago
- ☆70Updated 3 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆248Updated 4 years ago
- ☆153Updated last year
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆574Updated 2 years ago
- Code for the emrQA question answering dataset☆151Updated 3 years ago
- ☆99Updated 3 years ago
- System for Medical Concept Extraction and Linking☆412Updated 11 months ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- PyTorch Implementation of BioBERT☆336Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆595Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 3 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated last year
- ☆230Updated 7 years ago
- PubMed 200k RCT dataset: a large dataset for sequential sentence classification.☆197Updated last year
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆696Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆331Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆170Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆152Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- Source code for Medical Concept Embedding with Time-Aware Embedding☆22Updated 5 years ago
- BioBert Pytorch☆116Updated 2 years ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆68Updated 4 years ago