MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
β3,135Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for mimic-code
Users that are interested in mimic-code are comparing it to the libraries listed below
Sorting:
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-IIIβ472Jul 18, 2024Updated last year
- Python suite to construct benchmark machine learning datasets from the MIMIC-III π clinical database.β871Apr 16, 2023Updated 2 years ago
- Code and website related to the eICU Collaborative Research Databaseβ381Dec 19, 2024Updated last year
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-codeβ294Jun 17, 2021Updated 4 years ago
- Evaluation of the Sepsis-3 guidelines in MIMIC-IIIβ199Jun 21, 2022Updated 3 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β198Jan 11, 2026Updated last month
- Repository for the paper describing MIMIC-IIIβ84May 24, 2016Updated 9 years ago
- Introduction to MIMIC-III, the Critical Care Databaseβ86Jun 12, 2017Updated 8 years ago
- A customizable pipeline for multimodal data extraction from MIMIC-IV!β299Feb 16, 2026Updated last week
- Mapping the MIMIC-III database to the OMOP schemaβ144Mar 17, 2024Updated last year
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β99Jun 25, 2025Updated 8 months ago
- β131Sep 27, 2024Updated last year
- Replication of the arterial line study in MIMIC-IVβ76Oct 19, 2021Updated 4 years ago
- repository for Publicly Available Clinical BERT Embeddingsβ757Aug 25, 2020Updated 5 years ago
- Sepsis cohort from MIMIC datasetβ126Jul 6, 2023Updated 2 years ago
- Website for the MIMIC Critical Care Database (currently version MIMIC-III)β124Sep 26, 2025Updated 5 months ago
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.β426Oct 7, 2022Updated 3 years ago
- circEWS public codeβ76Oct 30, 2024Updated last year
- A Deep Learning Python Toolkit for Healthcare Applications.β1,449Updated this week
- This is a complete preprocessing, model training, and figure generation repo for "An attention based deep learning model of clinical evenβ¦β77Apr 25, 2024Updated last year
- multilabel classification of EHR notesβ298Jul 21, 2020Updated 5 years ago
- Transthoracic echocardiography and mortality in sepsis: analysis of the MIMIC-III databaseβ53Jun 1, 2021Updated 4 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.β88Oct 28, 2022Updated 3 years ago
- Predicting 30-day ICU readmissions from the MIMIC-III databaseβ89Mar 1, 2018Updated 7 years ago
- Evaluating the reproducibility of mortality prediction studies in the MIMIC-III databaseβ39Apr 11, 2018Updated 7 years ago
- Graph-based Attention Modelβ246Apr 17, 2023Updated 2 years ago
- Code repository for the critical data bookβ76Nov 19, 2019Updated 6 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β435Oct 17, 2022Updated 3 years ago
- RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanismβ224Nov 4, 2017Updated 8 years ago
- Real time mortality prediction in the MIMIC-III databaseβ54Apr 16, 2018Updated 7 years ago
- Installing MIMIC-IV in a local Postgres databaseβ46Jun 28, 2021Updated 4 years ago
- Repository for Med2Vec projectβ220Apr 21, 2018Updated 7 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"β250Aug 24, 2020Updated 5 years ago
- β229Sep 1, 2021Updated 4 years ago
- Medical Concept Annotation Toolβ522Jul 25, 2025Updated 7 months ago
- Code, documentation, and discussion around the MIMIC-CXR databaseβ297Jul 13, 2020Updated 5 years ago
- β24Jan 14, 2021Updated 5 years ago
- PIC (Pediatric Intensive Care) databaseβ46Dec 10, 2022Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).β588Mar 25, 2023Updated 2 years ago