ElofssonLab / PconsC4
Fast and easy contact prediction.
☆35Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for PconsC4
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- ☆29Updated 4 years ago
- ☆34Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆58Updated 3 months ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 10 months ago
- ☆75Updated 2 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 2 years ago
- Antibody-specific masked language model☆36Updated last year
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆21Updated 5 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆38Updated last year
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆31Updated 4 years ago
- ☆67Updated 4 years ago
- a python module for generating protein contact maps and distance maps☆46Updated 7 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆77Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Updated 2 years ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆20Updated last year
- pyFoldX: python bindings for FoldX.☆42Updated 3 years ago
- ☆46Updated 9 months ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆68Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆50Updated last year
- ☆19Updated last year
- AbLang: A language model for antibodies☆16Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆66Updated 4 years ago