sarahsirin / AB-Bind-Database
Antibody Binding Mutational Database
☆30Updated 5 years ago
Alternatives and similar repositories for AB-Bind-Database:
Users that are interested in AB-Bind-Database are comparing it to the libraries listed below
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- Fitness landscapes for antibodies☆57Updated this week
- ☆68Updated 4 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆32Updated 4 years ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆68Updated 4 years ago
- ☆21Updated 2 years ago
- ☆33Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 6 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 9 months ago
- ☆34Updated 3 years ago
- ☆25Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆21Updated 6 months ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆21Updated last year
- Public repository describing training and testing of AntiBERTa.☆57Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆44Updated last month
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 2 weeks ago
- ☆44Updated last year
- DLPacker☆28Updated 4 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 11 months ago
- ☆58Updated 3 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆15Updated 11 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆72Updated last week
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- ☆46Updated 7 months ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆53Updated this week