Alternatives and similar repositories for DeepSurf

Users that are interested in DeepSurf are comparing it to the libraries listed below

• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated 10 months ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• jivankandel / PUResNet
  Predicting protein-ligand binding sites using deep convolutional neural network
  ☆50Updated last year
• volkamerlab / kissim
  Subpocket-based fingerprint for kinase pocket comparison
  ☆33Updated 2 years ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆41Updated 7 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆42Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆45Updated 3 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• zhenglz / onionnet
  A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
  ☆83Updated 5 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• tommyhuangthu / FASPR
  Fast, accurate, and deterministic protein side-chain packing
  ☆37Updated 11 months ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆36Updated last month
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 7 months ago
• feiglab / idpgan
  ☆51Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆43Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated 2 weeks ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 8 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• nekitmm / DLPacker
  DLPacker
  ☆32Updated last year
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆42Updated last year
• DeepRank / pdb2sql
  Fast and versatile biomolecular structure PDB file parser using SQL queries
  ☆24Updated 2 years ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆40Updated 4 years ago
• PDBeurope / ccdutils
  A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…
  ☆75Updated 3 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 weeks ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• Vfold-RNA / RLDOCK
  ☆32Updated last year
• zhenglz / OnionNet-SFCT
  Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term
  ☆29Updated last year
• jacquesboitreaud / OptiMol
  Optimization of binding affinities in chemical space for drug discovery
  ☆35Updated 3 years ago