HUBioDataLab / CROssBARv2-KGLinks
This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher
☆11Updated last month
Alternatives and similar repositories for CROssBARv2-KG
Users that are interested in CROssBARv2-KG are comparing it to the libraries listed below
Sorting:
- The advanced implementation for BioChatter, using Next.js☆15Updated last year
- Template for creating a BioCypher-driven knowledge graph☆13Updated this week
- The light frontend for BioChatter, in pure Python☆54Updated 6 months ago
- An automated workflow to create disease-specific Knowledge Graphs☆18Updated 4 months ago
- Large language models as universal biomedical simulators☆20Updated last year
- Build PharMeBINet from different sources.☆20Updated last month
- Benchmark for LLM-based Agents in Computational Biology☆68Updated 3 months ago
- ☆32Updated 2 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Updated last year
- High level functionality to support and simplify metabolomics data annotation.☆18Updated 3 months ago
- Project code for BioHackathon Europe 2023.☆18Updated last year
- ☆18Updated last year
- MyChem.info: A BioThings API for chemical/drug annotations☆18Updated this week
- Python toolbox for multi-omics data mapping and analysis☆27Updated 2 years ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆29Updated 11 months ago
- metabolomics/lipidomics data processing☆10Updated 4 years ago
- 🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.☆20Updated 10 months ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆27Updated 9 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆40Updated 9 months ago
- Python client for the Open Targets REST API at targetvalidation.org☆26Updated 4 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Updated last year
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Updated 7 years ago
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆23Updated last week
- biotoolsregistry: discovery portal for bioinformatics☆82Updated last week
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Updated last year
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last month
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago