Daylily-Informatics / daylily-ephemeral-clusterLinks
(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
☆23Updated this week
Alternatives and similar repositories for daylily-ephemeral-cluster
Users that are interested in daylily-ephemeral-cluster are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆33Updated last week
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ☆22Updated 2 years ago
- NGS duplicate marking☆19Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Structural variant pipeline☆17Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆24Updated 6 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Structural variant (SV) analysis tools☆39Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 3 weeks ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 3 months ago