(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
☆22Jun 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for daylily-ephemeral-cluster
Users that are interested in daylily-ephemeral-cluster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 3 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- BIH Cluster Wiki☆19Jun 11, 2026Updated last week
- Expanded STR algorithm for Illumina sequencing data☆23Sep 11, 2022Updated 3 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆19Dec 19, 2019Updated 6 years ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated 3 weeks ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated 2 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆19Feb 4, 2026Updated 4 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- ☆11May 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for creating and manipulating immutable filesets☆13Dec 9, 2018Updated 7 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- ☆11Oct 23, 2025Updated 7 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆25Apr 1, 2026Updated 2 months ago
- Script to extract highly probable bots for further analysis☆15Sep 13, 2017Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- A tool to genotype CYP2D6 with WGS data☆60Oct 14, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆31Updated this week
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 3 months ago
- long-read depth breaking☆11Apr 19, 2018Updated 8 years ago
- The Pharmacogenomic Clinical Annotation Tool☆177Feb 25, 2026Updated 3 months ago
- Bayesian reconstruction of ancient DNA fragments☆30Aug 6, 2024Updated last year
- Python bindings to bwa mem☆32Mar 26, 2020Updated 6 years ago
- Dais interceptor chain in Rust+ClojureScript on Node.js☆18Oct 16, 2017Updated 8 years ago
- ☆13Sep 14, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- Colorized cat command in Python. Uses Pygments to do automatic syntax highlighting.☆13Dec 12, 2019Updated 6 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- ixgbe driver for Redox based on ixy.rs☆11Jul 30, 2019Updated 6 years ago
- Yet another LLM command line interface☆16Dec 9, 2024Updated last year
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Moved to: https://github.com/maxplanck-ie/parkour2☆32Aug 24, 2022Updated 3 years ago