DanuserLab / u-track3DLinks
Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
☆29Updated 2 weeks ago
Alternatives and similar repositories for u-track3D
Users that are interested in u-track3D are comparing it to the libraries listed below
Sorting:
- Particle tracking by solving linear assignment problem.☆61Updated last week
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Updated 4 months ago
- ☆38Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆19Updated 7 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- napari plugin for trackastra☆17Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Updated last month
- Pure python/C++ micro-manager ecosystem☆46Updated this week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 10 months ago
- Light microscopy simulation in python.☆43Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Denoising via adaptive binning.☆13Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Updated 3 years ago
- ☆49Updated last month
- ☆13Updated 10 months ago
- ☆51Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated this week
- Use ImageJ functionality from napari☆33Updated last month
- ☆12Updated 5 months ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆13Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated last month
- A napari plugin to analysis point spread functions.☆12Updated 10 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- A hub to start the next generation of Microscope Control Software☆59Updated 5 years ago
- ☆21Updated last year