Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
☆31May 29, 2026Updated 2 months ago
Alternatives and similar repositories for u-track3D
Users that are interested in u-track3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated 2 years ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11May 29, 2026Updated 2 months ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆55May 29, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 6 months ago
- MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements☆70Jun 28, 2026Updated last month
- StarDist plugin for napari☆40Aug 24, 2024Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 6 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆48Updated this week
- Main tasks for the Fractal analytics platform☆27Jul 23, 2026Updated 2 weeks ago
- High-Resolution Fourier Light-Field Microscopy for Volumetric Multi-Color Live-Cell Imaging☆21Jun 17, 2021Updated 5 years ago
- ☆34May 29, 2026Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆98May 15, 2026Updated 2 months ago
- Automated mitochondrial segmentation and tracking.☆35Sep 4, 2021Updated 4 years ago
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Updated this week
- A graphical user interface (GUI) for PIMS☆12Aug 12, 2020Updated 5 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Single Molecule Imaging Toolbox Extraordinaire☆18Dec 19, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Drift estimation☆16Oct 4, 2023Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 8 months ago
- A Board Game to teach co-localization analysis☆15Nov 1, 2024Updated last year
- Open-source preprocessing tool that can create, at the required level of accuracy, a fully conformal uniformly distributed grid for a giv…☆11Aug 26, 2022Updated 3 years ago
- Vasculature blood flow computation and impact of astrocytic endfeet on vessels☆11Feb 26, 2025Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- A napari plugin for clustering objects according to their properties.☆90Aug 3, 2026Updated last week
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated last year
- ☆10Feb 29, 2016Updated 10 years ago
- Deformable mirror calibration and control library☆24Feb 2, 2025Updated last year
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- Laboratory for Fluorescence Dynamics (LFD) file formats.☆11Jun 24, 2026Updated last month
- DAQmx Examples using Python with NI's nidaqmx package☆15Nov 6, 2025Updated 9 months ago
- This script shows how to use nidaqmx package to simultaneously and continuously write to and read from an NI DAQ measurement card analog …☆14Apr 4, 2021Updated 5 years ago