Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
☆29Jan 22, 2026Updated last month
Alternatives and similar repositories for u-track3D
Users that are interested in u-track3D are comparing it to the libraries listed below
Sorting:
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆51Jan 22, 2026Updated last month
- MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements☆67Feb 12, 2026Updated 2 weeks ago
- Interactive visualization and sharing of cell tracking data in the browser☆46Updated this week
- High-Resolution Fourier Light-Field Microscopy for Volumetric Multi-Color Live-Cell Imaging☆20Jun 17, 2021Updated 4 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Jan 14, 2026Updated last month
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated 3 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- 3D/4D volumetric rendering of microscopy data☆27Nov 10, 2025Updated 3 months ago
- Main tasks for the Fractal analytics platform☆23Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- ☆34Jan 20, 2026Updated last month
- Automated mitochondrial segmentation and tracking.☆33Sep 4, 2021Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated 2 weeks ago
- Supplementary Software for "A practical guide to scanning light-field microscopy with digital adaptive optics"☆10Jun 30, 2022Updated 3 years ago
- Open-source preprocessing tool that can create, at the required level of accuracy, a fully conformal uniformly distributed grid for a giv…☆11Aug 26, 2022Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆90Feb 16, 2026Updated last week
- Auction Algorithm for Sparse Linear Assignment Problems☆13Mar 15, 2021Updated 4 years ago
- ☆10Feb 29, 2016Updated 10 years ago
- A python port of the Single Molecule Tools software by Adam Wollman, aka. ADEMSCode.☆11Sep 30, 2021Updated 4 years ago
- community detection in multiplex networks☆10Apr 23, 2016Updated 9 years ago
- Version 1.2☆13Mar 15, 2017Updated 8 years ago
- Multi-threaded SDF generation via hp approximation in C++☆13Jun 22, 2024Updated last year
- Arduino Communication through Serial☆13Oct 11, 2023Updated 2 years ago
- This jupyter notebook is part of the lecture "Data Science for Raman spectroscopy" imparted by Nicolás Coca-López during the Hands-on Wor…☆13Jan 15, 2023Updated 3 years ago
- Thanks to these examples, you can start to do python project with NI DAQmx devices faster (reqired python 3.6.4)☆10Mar 22, 2020Updated 5 years ago
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- ☆10Nov 22, 2016Updated 9 years ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆20Oct 13, 2025Updated 4 months ago
- ☆17Feb 3, 2026Updated 3 weeks ago
- Julia for Java binding☆11Jun 7, 2025Updated 8 months ago
- Training material based on webinar events☆10Oct 6, 2020Updated 5 years ago
- Tools for mesh manipulation (Voxelizer, WinMeshView)☆11Jul 28, 2017Updated 8 years ago
- Two phase particle transport model simulating formation damage in porous media☆10Oct 9, 2017Updated 8 years ago