Alternatives and similar repositories for u-track3D

Users that are interested in u-track3D are comparing it to the libraries listed below

• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last month
• imaris / ImarisWriter
  ☆37Updated last year
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated this week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆52Updated this week
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated last month
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆13Updated 7 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 6 months ago
• SebastienTs / MosaicExplorerJ
  An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
  ☆13Updated 3 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 2 months ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated 2 months ago
• morphometrics / morphometrics
  ☆20Updated last year
• guiwitz / DLImaging
  Course on Deep Learning for imaging using PyTorch
  ☆13Updated 3 years ago
• maurosilber / binlets
  Denoising via adaptive binning.
  ☆12Updated 11 months ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆42Updated last month
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆17Updated last month
• BiAPoL / Quantitative_Bio_Image_Analysis_with_Python_2022
  This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
  ☆15Updated 2 years ago
• pymmcore-plus / pymmcore-plus
  Pure python/C++ micro-manager ecosystem
  ☆36Updated this week
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• adanog / MSSR
  MSSR Plugin
  ☆13Updated 7 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 months ago
• zoccoler / napari-flim-phasor-plotter
  ☆10Updated 2 months ago
• haesleinhuepf / napari-plot-profile
  ☆18Updated last month
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 9 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆19Updated last week
• acquire-project / acquire-python
  Acquire: a multi-camera video streaming software focusing on microscopy
  ☆21Updated 7 months ago
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆26Updated last week
• True-North-Intelligent-Algorithms / tnia-python
  A collection of useful python utilities from True North Intelligent Algorithms
  ☆36Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 7 months ago