DanuserLab / u-trackLinks
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
☆50Updated last month
Alternatives and similar repositories for u-track
Users that are interested in u-track are comparing it to the libraries listed below
Sorting:
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆62Updated 7 months ago
- STORM movie analysis code☆121Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆54Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆152Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- ☆30Updated 9 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 4 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆82Updated 6 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated last week
- Gamified image segmentation quality estimation☆17Updated 5 months ago
- ☆36Updated last year
- Three-dimensional residual channel attention networks☆54Updated 3 years ago
- The ImageJ plugin to run deep-learning models☆98Updated 3 months ago
- ☆85Updated 7 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- A collection of useful python utilities from True North Intelligent Algorithms☆41Updated 2 weeks ago
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆105Updated 7 years ago
- ☆77Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆45Updated 3 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated last week
- ☆51Updated 5 months ago