DanuserLab / u-trackLinks
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
☆51Updated 2 weeks ago
Alternatives and similar repositories for u-track
Users that are interested in u-track are comparing it to the libraries listed below
Sorting:
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 10 months ago
- STORM movie analysis code☆122Updated last year
- Three-dimensional residual channel attention networks☆55Updated 3 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated last month
- ☆33Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated last year
- ☆18Updated 2 years ago
- Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"☆58Updated 5 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ☆36Updated last year
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Updated 3 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆36Updated 4 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆108Updated 7 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ImageJ macros and scripts written at the imaging facility MRI☆37Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated this week
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago