DanuserLab / u-track
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
☆47Updated 2 weeks ago
Alternatives and similar repositories for u-track:
Users that are interested in u-track are comparing it to the libraries listed below
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆56Updated 3 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆46Updated this week
- Three-dimensional residual channel attention networks☆51Updated 2 years ago
- MSSR Plugin☆13Updated 5 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A simple single molecule tracking pipeline with a graphic user interface for quality control.☆12Updated last year
- Microscope control software☆67Updated last month
- A general illumination correction method for optical microscopy.☆40Updated 3 years ago
- ☆20Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- A collection of useful python utilities from True North Intelligent Algorithms☆33Updated this week
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 5 months ago
- Localization analysis software for super-resolution microscopy☆21Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- STORM movie analysis code☆118Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- Detection of Molecules plugin for ImageJ, Utrecht University☆15Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 6 months ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated last month
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆19Updated 2 years ago
- Combined Repos from DAIN and Zooming SlowMo☆20Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago