Alternatives and similar repositories for Inferelator

Users that are interested in Inferelator are comparing it to the libraries listed below

• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 8 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• ELELAB / MoonlightR
  ☆17Updated last year
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 6 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 2 months ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago