Alternatives and similar repositories for Inferelator:

Users that are interested in Inferelator are comparing it to the libraries listed below

• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated last month
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 8 months ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 6 months ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated 11 months ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated last month
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 5 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 4 months ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• statOmics / stageR
  stageR package
  ☆11Updated last year
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated 10 months ago
• ELELAB / MoonlightR
  ☆17Updated 9 months ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 8 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 5 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆16Updated 2 years ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 7 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 2 months ago