hfang-bristol / XGR
An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
β10Updated 2 years ago
Alternatives and similar repositories for XGR:
Users that are interested in XGR are comparing it to the libraries listed below
- πΆ hlabud: HLA genotype analysis in Rβ16Updated last week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: httβ¦β11Updated 3 weeks ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β18Updated 3 months ago
- GEO RNA-seq Experiments Processing Pipelineβ21Updated 5 years ago
- Code for EpiMap data browserβ14Updated 10 months ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inferenceβ11Updated 8 months ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- Bedfile perturbation toolβ17Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.β12Updated last year
- Scripts for reproducing analyses of large RNA-seq datasetsβ15Updated 5 years ago
- Analysis tools for PhIP-seq experimentsβ12Updated 3 years ago
- Machine learning use cases for teachingβ13Updated 7 years ago
- R interface to megadepth: BigWig and BAM related utilitiesβ12Updated 4 months ago
- R package for haplotype phasing using single-cell RNA-seq dataβ13Updated 7 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.β16Updated 6 years ago
- Personalized prioritization of driver genes in cancerβ9Updated 3 years ago
- Archived version of RUVSeqβ8Updated 8 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyiβ¦β11Updated 4 years ago
- Differential Mutation Analysisβ11Updated 4 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal dataβ13Updated this week
- The official Inferelator repository maintained by current or former Bonneau lab membersβ9Updated 7 years ago
- β17Updated 11 months ago
- Mean Alterations Using Discrete Expressionβ14Updated last year
- β12Updated 11 months ago
- WES HLA Typing based on multiple alternative toolsβ15Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization modelβ21Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- integrative pathway analysis with modern PCA methodology and gene selectionβ11Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated last year