Alternatives and similar repositories for XGR:

Users that are interested in XGR are comparing it to the libraries listed below

• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated last week
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆13Updated 3 years ago
• ELELAB / MoonlightR
  ☆17Updated 10 months ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆15Updated 4 years ago
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 4 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 9 months ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated last month
• daisybio / SPONGE
  Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
  ☆11Updated 7 months ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆13Updated last month
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆21Updated 4 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 4 years ago
• lasersonlab / phip-stat
  Analysis tools for PhIP-seq experiments
  ☆12Updated 3 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 2 months ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• KaiAragaki / tidyestimate
  ESTIMATE tumor infiltration, the tidy way
  ☆14Updated last year
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated 11 months ago
• DeveauP / QuantumClone
  Clonal reconstruction from HTS data
  ☆10Updated 3 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 5 years ago