Alternatives and similar repositories for XGR

Users that are interested in XGR are comparing it to the libraries listed below

• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• lasersonlab / phip-stat
  Analysis tools for PhIP-seq experiments
  ☆12Updated 3 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 2 months ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• Singh-Lab / Differential-Mutation-Analysis
  Differential Mutation Analysis
  ☆11Updated 5 years ago
• DeveauP / QuantumClone
  Clonal reconstruction from HTS data
  ☆10Updated 3 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 8 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆17Updated 10 months ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• cbare / vcf2maf
  Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
  ☆14Updated 8 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆17Updated 4 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆11Updated 7 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year