hfang-bristol / XGR
An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
☆10Updated 2 years ago
Alternatives and similar repositories for XGR:
Users that are interested in XGR are comparing it to the libraries listed below
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Analysis tools for PhIP-seq experiments☆12Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 4 years ago
- Code for EpiMap data browser☆14Updated 8 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last week
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Updated 10 months ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆11Updated 6 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last month
- Bedfile perturbation tool☆17Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- ☆10Updated 9 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago
- A rapido and lightweight method for PGS computation☆13Updated 4 months ago
- ☆12Updated 5 years ago
- cEll tyPe enrIChment☆14Updated 2 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- R package for obtaining TCR alpha-beta sequence pairs☆8Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago