Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.
☆14Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for EukProt
Users that are interested in EukProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆24Aug 19, 2021Updated 5 years ago
- Pipeline used for de novo genome assembly @CNAG☆11Jul 22, 2026Updated 3 months ago
- ☆58May 5, 2025Updated last year
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- ☆16Apr 11, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated 3 months ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- The MorphoCut image processing pipeline library☆13Aug 11, 2025Updated last year
- ☆83May 2, 2026Updated 6 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Oct 22, 2026Updated 3 weeks ago
- ☆18Feb 16, 2026Updated 8 months ago
- A collection of snakemake scripts to streamline genome annotation☆14Mar 24, 2026Updated 7 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sorting and subsampling phylogenomic datasets☆36Apr 9, 2025Updated last year
- ParaFly - parallel cmd processing utility☆15Aug 10, 2021Updated 5 years ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- ☆18Nov 16, 2015Updated 10 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Oct 25, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Two pipelines to perform phylogenomic analysis☆12Oct 7, 2025Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- Workshop on Genomics - Genomics Adventure☆47Jan 22, 2026Updated 9 months ago
- phylobayes mpi☆28Jul 30, 2026Updated 3 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- ☆20Apr 13, 2022Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 5 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆20Oct 14, 2020Updated 6 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 8 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- ☆65Oct 28, 2026Updated 2 weeks ago
- ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-spec…☆10Aug 20, 2024Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- ☆13Sep 13, 2025Updated last year
Are these results useful?