Epitope Prediction Pipeline and analysis tools built around AlphaFold 2
☆20May 9, 2024Updated last year
Alternatives and similar repositories for PAbFold
Users that are interested in PAbFold are comparing it to the libraries listed below
Sorting:
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Jun 17, 2024Updated last year
- ☆19Mar 16, 2025Updated 11 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆15May 29, 2024Updated last year
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated 11 months ago
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated last month
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- ☆10Oct 31, 2025Updated 4 months ago
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- ☆20Aug 5, 2025Updated 6 months ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- ☆11May 3, 2025Updated 10 months ago
- ☆56Sep 12, 2025Updated 5 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- Baseline model for PPB-Affinity benchmark data☆35May 21, 2025Updated 9 months ago
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year
- Research repository to the publication: Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molec…☆14Apr 2, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Aug 23, 2024Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆40Nov 4, 2025Updated 4 months ago
- ☆15Jun 3, 2025Updated 9 months ago
- Implementation of AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction☆16Jun 19, 2025Updated 8 months ago
- ☆18Apr 16, 2024Updated last year
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆20Sep 28, 2024Updated last year
- The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…☆28Aug 26, 2025Updated 6 months ago
- ☆40Sep 17, 2024Updated last year
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- ☆17Oct 27, 2024Updated last year
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Jan 26, 2026Updated last month
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆16Apr 7, 2025Updated 10 months ago
- ☆117Jan 3, 2026Updated 2 months ago
- Official Implementation of CompassDock☆21Feb 13, 2026Updated 2 weeks ago
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 9 months ago
- Improved antibody structure-based design using inverse folding☆153Dec 9, 2025Updated 2 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆31Feb 12, 2026Updated 2 weeks ago
- Code for ApoDock☆21Apr 7, 2025Updated 10 months ago