Alternatives and similar repositories for microsnoop-publish

Users that are interested in microsnoop-publish are comparing it to the libraries listed below

• cellimnet / scellseg-publish

  View on GitHub
  A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
  ☆10Apr 19, 2024Updated last year
• nygctech / PICASSO

  View on GitHub
  Development of PICASSO plugin for napari
  ☆16Jan 17, 2023Updated 3 years ago
• BaroudLab / Griottes

  View on GitHub
  Python program to generate NetworkX graphs from segmented images.
  ☆14Apr 14, 2023Updated 2 years ago
• aelefebv / nellie

  View on GitHub
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆88Jan 14, 2026Updated last month
• cytomining / copairs

  View on GitHub
  Find profile pairs and compute retrieval metrics between them.
  ☆22Jan 27, 2026Updated 2 weeks ago
• MIAnalyzer / MIA

  View on GitHub
  Microsopic Image Analyzer (MIA)
  ☆28Aug 19, 2025Updated 5 months ago
• PRNicovich / ClusDoC

  View on GitHub
  Repository associated with Clus-DoC clustering and degree of colocalization analysis
  ☆11Apr 25, 2022Updated 3 years ago
• UCD4IDS / MultiscaleGraphSignalTransforms.jl

  View on GitHub
  MultiscaleGraphSignalTransforms.jl is a collection of software tools written in the Julia programming language for graph signal processin…
  ☆11Sep 13, 2025Updated 5 months ago
• HenriquesLab / NanoPyx

  View on GitHub
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆89Jan 17, 2026Updated 3 weeks ago
• clEsperanto / pyclesperanto

  View on GitHub
  GPU-accelerated Image Processing library for Python
  ☆53Feb 2, 2026Updated last week
• AllenCellModeling / napari-aicsimageio

  View on GitHub
  Multiple file format reading directly into napari using pure Python
  ☆39Oct 15, 2025Updated 3 months ago
• BIOP / biop-bash-scripts

  View on GitHub
  Bash scripts to simplify your life (let's hope so!)
  ☆11Jul 21, 2025Updated 6 months ago
• dchary / ucdeconvolve_paper

  View on GitHub
  UniCell Deconvolve Paper
  ☆10Apr 25, 2023Updated 2 years ago
• SlicerMorph / S_2019

  View on GitHub
  Lectures, labs and all documents associated with 3D Morphometrics workshop at FHL (Summer 2019)
  ☆14Feb 6, 2020Updated 6 years ago
• broadinstitute / cell-health

  View on GitHub
  Predicting Cell Health with Morphological Profiles
  ☆39Jan 26, 2022Updated 4 years ago
• lumevr / vLume

  View on GitHub
  Repository for vLume releases and changes
  ☆10Oct 12, 2020Updated 5 years ago
• HiDiHlabs / SpatialLeiden

  View on GitHub
  Implementation of multiplex Leiden for analysis of spatial omics data
  ☆17Feb 2, 2026Updated last week
• BiaPyX / BiaPy

  View on GitHub
  Open source Python library for building bioimage analysis pipelines
  ☆189Updated this week
• MolloiLab / DistanceTransforms.jl

  View on GitHub
  Fast, gpu-accelerated distance transforms
  ☆13Mar 7, 2025Updated 11 months ago
• HenriquesLab / PhotoFiTT

  View on GitHub
  Computational workflows to assess phototoxicity in live-cell microscopy experiments
  ☆11Sep 15, 2025Updated 4 months ago
• pr4deepr / cellpose-colab

  View on GitHub
  Google Colab notebook for Cellpose
  ☆10Aug 21, 2025Updated 5 months ago
• Image-Py / demoplugin

  View on GitHub
  some demo to show how to write imagepy plugin
  ☆12Jun 25, 2020Updated 5 years ago
• koesterlab / setup-slurm-action

  View on GitHub
  A github action to setup a small SLURM cluster for testing purposes.
  ☆14Jul 20, 2025Updated 6 months ago
• MouseLand / neuropop

  View on GitHub
  analysis tools for large-scale neural recordings
  ☆16Apr 4, 2025Updated 10 months ago
• djpbarry / Giani

  View on GitHub
  General Image Analysis of Nuclei-containing Images
  ☆10Jul 11, 2025Updated 7 months ago
• gaocq / Local-Patch-Network-with-Global-Attention

  View on GitHub
  This the implementation of our paper entitled "Local Patch Network with Global Attention for Infrared Small Target Detection"
  ☆10May 16, 2022Updated 3 years ago
• esgomezm / microscopy-dl-suite-tf

  View on GitHub
  Deep Learning segmentation suite designed for 2D microscopy image segmentation
  ☆10Dec 17, 2021Updated 4 years ago
• XDG-Personal / VectorPath

  View on GitHub
  "Potrace" vector trace library Visual Studio Solution&Wrapper&Demos
  ☆11Mar 9, 2019Updated 6 years ago
• rolayoalarcon / mole_antimicrobial_potential

  View on GitHub
  Using MolE pre-trained representation to predict novel antimicrobial compounds
  ☆11Aug 28, 2025Updated 5 months ago
• uhlmanngroup / ShapeEmbedLite

  View on GitHub
  ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis
  ☆20Oct 13, 2025Updated 4 months ago
• haesleinhuepf / napari-workflows

  View on GitHub
  ☆13Aug 16, 2024Updated last year
• jlaura / PyHAT

  View on GitHub
  ☆14Mar 14, 2024Updated last year
• gexijin / iDEP-old-version

  View on GitHub
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Mar 1, 2019Updated 6 years ago
• ELOESZHANG / ECA-STT-for-IR-small-target-detection

  View on GitHub
  Edge and Corner Awareness-based Spatial-temporal Tensor Model for Infrared Small Target Detection
  ☆12Nov 6, 2020Updated 5 years ago
• FuNian788 / DeeCamp32

  View on GitHub
  ☆10Aug 19, 2019Updated 6 years ago
• feldman4 / OpticalPooledScreens

  View on GitHub
  Code and examples for optical pooled screens (updated protocol).
  ☆14Jan 28, 2024Updated 2 years ago
• Leo-Lee15 / Webscrapping

  View on GitHub
  R语言爬虫；Python爬虫；rvest；Rcurl
  ☆15Jan 24, 2018Updated 8 years ago
• kindlychung / SuperEnum.jl

  View on GitHub
  Julia enum made nicer
  ☆10May 28, 2020Updated 5 years ago
• guiwitz / DLImaging

  View on GitHub
  Course on Deep Learning for imaging using PyTorch
  ☆13Feb 2, 2022Updated 4 years ago