cellimnet / microsnoop-publishLinks
Microsnoop: A generalist tool for microscopy image representation
☆10Updated 7 months ago
Alternatives and similar repositories for microsnoop-publish
Users that are interested in microsnoop-publish are comparing it to the libraries listed below
Sorting:
- ☆34Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Microsopic Image Analyzer (MIA)☆28Updated last month
- Framework for image and flow cytometry analysis☆30Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last month
- ☆20Updated last year
- Piecewise alignment for layers of mosaics☆29Updated last month
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 months ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- Interactive visualization of spatial omics data☆69Updated last week
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- Your Personal Assistant in Computational Bioimaging.☆44Updated 6 months ago
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago
- collection of mass spectrometry imaging workflows☆15Updated 4 months ago
- computer vision models for single-cell phenotyping☆72Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆151Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆57Updated 11 months ago
- The official QuPath extension for InstanSeg☆26Updated last week
- StarDist plugin for napari☆39Updated last year
- Find profile pairs and compute metrics between them.☆20Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆16Updated last week
- Accurate and efficient spot detection for microscopy data☆102Updated this week
- CellProfiler tutorial pipelines and images☆96Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- 3D segmentation for cells and organoids of 3D multichannel images☆24Updated 3 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 2 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago