CarineRey / caarsLinks
CAARS: Comparative Assembly and Annotation of RNA-Seq data
☆8Updated 5 years ago
Alternatives and similar repositories for caars
Users that are interested in caars are comparing it to the libraries listed below
Sorting:
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆20Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Pan gGnome Viewer☆10Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Allele frequency filter app☆14Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated this week
- de novo targeted gene assembly☆23Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Updated last year
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 5 months ago
- ☆12Updated last year
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 3 weeks ago
- ☆11Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆19Updated 8 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated last month
- interactive plots for differential expression analysis☆32Updated last week