CBC-UCONN / RNA-Seq-Model-Organism-Arabidopsis-thaliana
☆11Updated this week
Related projects: ⓘ
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 9 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆40Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆35Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 4 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- ☆23Updated last year
- ☆14Updated 2 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆15Updated 8 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated last month
- ☆21Updated 5 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆32Updated last year
- A novel genome assembly pipeline based on deep learning☆39Updated this week
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆19Updated 2 years ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆23Updated last month
- BamDeal: a comprehensive toolkit for bam manipulation☆13Updated last year
- Scripts and other material for the assembly and analysis of ratite genomes.☆24Updated last year
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Hapmap-v1☆11Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated last week
- A tool for performing collinearity-incorporating homology inference☆26Updated 11 months ago
- A shiny application to visualize MCscan result☆31Updated last year
- Scripts to convert between file formats for various analyses☆14Updated last month
- Bulked-Segregant Analysis using vcf file with or without parents☆23Updated 5 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆27Updated 3 months ago