BorgwardtLab / maldi_amr
Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
☆31Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for maldi_amr
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- CMap Notebooks for LINCS 2020 Workshop☆45Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆36Updated 2 years ago
- ☆20Updated 3 years ago
- Generating biologically informed neural networks☆28Updated 6 months ago
- 5-day workshop on Metabolomics and Data Analysis☆16Updated 5 years ago
- Comprehensive Python client for the Uniprot REST API☆44Updated 3 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆24Updated 7 months ago
- MetNormalizer is used to normalize large scale metabolomics data.☆20Updated 3 years ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆21Updated 5 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆22Updated last year
- Chemical Similarity Enrichment analysis of metabolomics datasets☆27Updated 4 months ago
- Knowledge-primed neural networks☆34Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆43Updated 3 years ago
- ☆19Updated 4 years ago
- ☆14Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆34Updated 8 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 8 months ago
- Network-based project to explore gene connectivity through biological scales☆22Updated last month
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated 8 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- Analysis platform for large-scale dose-dependent data☆20Updated 2 weeks ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆19Updated last week
- ☆13Updated 2 years ago
- rMSI processing methods using C++☆10Updated 2 years ago
- Python package and command line tool for epitope prediction☆49Updated 3 months ago