BodenmillerGroup / xtiff
A tiny Python library for writing multi-channel TIFF stacks.
☆28Updated 3 weeks ago
Alternatives and similar repositories for xtiff:
Users that are interested in xtiff are comparing it to the libraries listed below
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- scalable multiscale image pyramids in python☆27Updated 8 months ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- serve Zarr datasets via HTTP☆28Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated last month
- Reading HDF5 files with Zarr☆11Updated 3 years ago
- Illustrations created by Henning Falk for the Zarr community☆31Updated 2 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆63Updated this week
- Pydantic models for OME-NGFF☆23Updated last week
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated 2 weeks ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week
- ☆31Updated 2 weeks ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated last month
- ☆22Updated 4 years ago
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- Python project containing Ice remoting code for OMERO☆23Updated this week
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- ☆20Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 weeks ago
- ☆40Updated 8 months ago
- Create web-based OME-Zarr galleries☆16Updated 2 months ago
- A minimal Zarr image viewer based on Viv.☆142Updated this week
- ☆16Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆20Updated 9 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 7 months ago