BodenmillerGroup / xtiff
A tiny Python library for writing multi-channel TIFF stacks.
☆28Updated last month
Alternatives and similar repositories for xtiff
Users that are interested in xtiff are comparing it to the libraries listed below
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 3 months ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- scalable multiscale image pyramids in python☆27Updated 9 months ago
- serve Zarr datasets via HTTP☆28Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated 3 weeks ago
- Gamified image segmentation quality estimation☆17Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆20Updated last month
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆71Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Pydantic models for OME-NGFF☆23Updated this week
- ☆16Updated 2 years ago
- A 3D interactivity toolbox for napari☆34Updated 3 weeks ago
- ☆20Updated 3 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated last week
- Process images using SimpleITK in napari☆21Updated 2 weeks ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated last month
- ☆22Updated 4 years ago
- Speed up coding/extending image analysis in Python.☆32Updated last month
- A dataset for loading zarr files to be used in machine learning training pipelines☆32Updated last week
- Easily read and write ome-tiff images in python☆27Updated last year
- native Python dataclasses for the OME data model☆56Updated last week
- python tools for BigDataViewer☆22Updated 4 months ago
- ☆20Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 3 months ago
- Python project containing Ice remoting code for OMERO☆23Updated last month
- Reading HDF5 files with Zarr☆11Updated 3 years ago
- ☆14Updated this week