roblanf / minion_multiQC
multi-tool QC for minion data
☆9Updated 6 years ago
Alternatives and similar repositories for minion_multiQC:
Users that are interested in minion_multiQC are comparing it to the libraries listed below
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 5 months ago
- Nanopore Real-Time Analysis Tool☆16Updated 6 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- ☆19Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆11Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- ☆12Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- blast, shmlast☆22Updated 4 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Read contamination removal☆25Updated last year
- ☆17Updated last month
- Genomic Assemblies Merger for NGS☆26Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 3 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 9 months ago
- Ebola virus surveillance☆16Updated 8 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Infer the age of ancestral nodes in a tree sequence.☆20Updated this week
- Variant call adjudication☆16Updated 9 months ago
- ☆19Updated 8 years ago