Alternatives and similar repositories for multistrand

Users that are interested in multistrand are comparing it to the libraries listed below

• learningmatter-mit / peptimizer
  Peptide optimization with Machine Learning
  ☆77Updated 3 years ago
• BobbyLangan / DeNovoDesignofBioactiveProteinSwitches
  Code used in the manuscript for De Novo Design of Bioactive Protein Switches
  ☆16Updated 6 years ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated last year
• RomeroLab / RLXF
  Consolidated repository to perform RLXF
  ☆36Updated 2 months ago
• suzuki-2001 / adaptyv-protein-comp
  Design data and process for the AdaptyvBio protein design competition
  ☆10Updated last year
• mmagnus / awesome-rna-3D-tools
  awesome tools for RNA
  ☆17Updated 3 years ago
• 310-ai / lib310
  lib310 python package
  ☆23Updated 2 years ago
• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆43Updated 2 years ago
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆32Updated 2 years ago
• brsynth / RetroPathRL
  Reinforcement Learning based bioretrosynthesis tool
  ☆54Updated 8 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆87Updated last year
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 5 months ago
• lightdock / lightdock-rust
  A Rust implementation of the LightDock macromolecular docking software
  ☆29Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated 3 weeks ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆75Updated 2 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆53Updated 4 years ago
• chopralab / lemon
  A framework for rapidly mining structural information from the Protein Data Bank
  ☆53Updated 5 years ago
• ericmjl / protein-interaction-network
  Computes a molecular graph for protein structures.
  ☆58Updated this week
• mabr3112 / ProtFlow
  A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…
  ☆32Updated last month
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆62Updated 2 months ago
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆59Updated 4 years ago
• BAMeScience / fiora
  Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…
  ☆46Updated 2 months ago
• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆49Updated 3 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated 2 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• schrodinger / gpusimilarity
  A Cuda/Thrust implementation of fingerprint similarity searching
  ☆109Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year