Alternatives and similar repositories for HPA-competition

Users that are interested in HPA-competition are comparing it to the libraries listed below

• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆22Updated 5 years ago
• hwanglab / TILs_Analysis
  Pan-cancer tils analysis study by Hongming Xu
  ☆14Updated 4 years ago
• PathologyDataScience / SCNN
  Survival Convolutional Neural Networks
  ☆68Updated 2 years ago
• artkulak / osic-pulmonary-fibrosis-progression
  1st place solution of OSIC Pulmonary Fibrosis Progression competition at Kaggle
  ☆25Updated 4 years ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆108Updated 2 years ago
• btcrabb / SlideSeg
  A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
  ☆80Updated 3 years ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆38Updated 4 years ago
• matjesg / deepflash2
  A deep-learning pipeline for segmentation of ambiguous microscopic images.
  ☆63Updated 4 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 3 years ago
• gagarin37 / deep_learning_pca
  ☆23Updated 5 years ago
• DataX-JieHao / Cox-PASNet
  Pathway-based sparse deep neural network for survival analysis
  ☆38Updated 2 years ago
• jlevy44 / PathFlowAI
  A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
  ☆42Updated 2 years ago
• Tombaugh / CapSurv
  CapSurv: Capsule Network for Survival Analysis With Whole Slide Pathological Images
  ☆10Updated 6 years ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆21Updated 5 months ago
• gevaertlab / metalearning_survival
  ☆16Updated 4 years ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆69Updated 10 months ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 7 months ago
• jlevy44 / WSI-GTFE
  Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
  ☆23Updated 5 years ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆69Updated 2 years ago
• KostiukIvan / Multiple-instance-learning-with-graph-neural-networks
  Multiple instance learning with graph neural networks.
  ☆30Updated 4 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆17Updated 5 years ago
• drmaxchen-gbc / HCC-deep-learning
  HCC_Deep_learning
  ☆19Updated 5 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated last month
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 6 years ago
• zhangxiaoyu11 / OmiEmbed
  Multi-task deep learning framework for multi-omics data analysis
  ☆48Updated 3 years ago
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 5 years ago
• AdalbertoCq / Pathology-GAN
  Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…
  ☆98Updated 4 years ago
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆17Updated 5 years ago
• DeepMicroscopy / SlideRunner
  SlideRunner is a tool for massive cell annotations in whole slide images
  ☆79Updated last month