Alternatives and similar repositories for HPA-competition

Users that are interested in HPA-competition are comparing it to the libraries listed below

• hwanglab / TILs_Analysis
  Pan-cancer tils analysis study by Hongming Xu
  ☆14Updated 4 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆22Updated 5 years ago
• artkulak / osic-pulmonary-fibrosis-progression
  1st place solution of OSIC Pulmonary Fibrosis Progression competition at Kaggle
  ☆25Updated 4 years ago
• PathologyDataScience / SCNN
  Survival Convolutional Neural Networks
  ☆69Updated 2 years ago
• zhangxiaoyu11 / OmiTrans
  The first GANs-based omics-to-omics translation framework
  ☆13Updated last year
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆36Updated 4 years ago
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 5 years ago
• DataX-JieHao / Cox-PASNet
  Pathway-based sparse deep neural network for survival analysis
  ☆38Updated 2 years ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 6 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 3 years ago
• zhangxiaoyu11 / OmiEmbed
  Multi-task deep learning framework for multi-omics data analysis
  ☆47Updated 3 years ago
• btcrabb / SlideSeg
  A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
  ☆78Updated 3 years ago
• gagarin37 / deep_learning_pca
  ☆24Updated 5 years ago
• jlevy44 / WSI-GTFE
  Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
  ☆23Updated 4 years ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• matjesg / deepflash2
  A deep-learning pipeline for segmentation of ambiguous microscopic images.
  ☆63Updated 3 months ago
• KostiukIvan / Multiple-instance-learning-with-graph-neural-networks
  Multiple instance learning with graph neural networks.
  ☆30Updated 4 years ago
• jlevy44 / PathFlowAI
  A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
  ☆40Updated 2 years ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆63Updated 2 months ago
• alonalj / PathoMCH
  ☆21Updated 3 years ago
• MMostavi / CNNCancerType
  This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".
  ☆12Updated 4 years ago
• tuttelikz / farabio
  PyTorch toolkit for biomedical imaging
  ☆52Updated 10 months ago
• LGQ330 / Cx22
  ☆19Updated last year
• hwanglab / tcga_tmb_prediction
  TCGA BLCA tmb prediction by Hongming Xu
  ☆13Updated 4 years ago
• LincolnSteinLab / MMDRP
  Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning
  ☆14Updated last year
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆107Updated 2 years ago
• MIMBCD-UI / dataset-uta4-dicom
  [AVI 2020] UTA4: Medical Imaging DICOM files dataset.
  ☆17Updated 4 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆17Updated 5 years ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆19Updated 4 months ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆69Updated 9 months ago