Alternatives and similar repositories for HPA-competition

Users that are interested in HPA-competition are comparing it to the libraries listed below

• hwanglab / TILs_Analysis
  Pan-cancer tils analysis study by Hongming Xu
  ☆14Updated 4 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆22Updated 5 years ago
• PathologyDataScience / SCNN
  Survival Convolutional Neural Networks
  ☆68Updated 2 years ago
• stanfordmlgroup / DLBCL-Morph
  DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …
  ☆38Updated 4 years ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 3 years ago
• jlevy44 / PathFlowAI
  A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
  ☆42Updated 2 years ago
• zhangxiaoyu11 / OmiTrans
  The first GANs-based omics-to-omics translation framework
  ☆13Updated 2 years ago
• Tombaugh / CapSurv
  CapSurv: Capsule Network for Survival Analysis With Whole Slide Pathological Images
  ☆10Updated 6 years ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 8 months ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆108Updated 2 years ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆68Updated 11 months ago
• jlevy44 / WSI-GTFE
  Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
  ☆23Updated 5 years ago
• alonalj / PathoMCH
  ☆21Updated 3 years ago
• btcrabb / SlideSeg
  A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
  ☆80Updated 3 years ago
• DataX-JieHao / Cox-PASNet
  Pathway-based sparse deep neural network for survival analysis
  ☆38Updated 2 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆17Updated 5 years ago
• artkulak / osic-pulmonary-fibrosis-progression
  1st place solution of OSIC Pulmonary Fibrosis Progression competition at Kaggle
  ☆25Updated 5 years ago
• drmaxchen-gbc / HCC-deep-learning
  HCC_Deep_learning
  ☆19Updated 5 years ago
• zhangxiaoyu11 / OmiEmbed
  Multi-task deep learning framework for multi-omics data analysis
  ☆48Updated 3 years ago
• ChristianMarzahl / WsiRegistration
  Robust quad-tree based registration on whole slide images
  ☆21Updated 6 months ago
• PingjunChen / ThyroidInteractive
  Suspicious Regions-Based Whole Slide Image Analysis
  ☆10Updated 2 years ago
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 6 years ago
• luisvalesilva / wsipre
  Handling whole-slide images with region-level annotations.
  ☆10Updated 6 years ago
• matjesg / deepflash2
  A deep-learning pipeline for segmentation of ambiguous microscopic images.
  ☆63Updated 5 months ago
• gevaertlab / metalearning_survival
  ☆16Updated 4 years ago
• gagarin37 / deep_learning_pca
  ☆23Updated 5 years ago
• markowetzlab / pathml-tutorial
  A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…
  ☆24Updated 3 years ago
• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 5 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆61Updated 3 years ago