smaegol / nanotailLinks
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
☆11Updated last year
Alternatives and similar repositories for nanotail
Users that are interested in nanotail are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆63Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Merging paired-end reads and removing adapters☆46Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ☆59Updated 2 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 5 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Somatic structural variant caller for long-read data☆80Updated last week
- ☆33Updated 3 weeks ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆47Updated 2 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last week
- BigWig and BAM utilities☆97Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- ☆23Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆138Updated last month
- PHAST☆75Updated this week
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Find and characterise transposable element insertions☆21Updated 2 years ago