smaegol / nanotail
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
☆10Updated 7 months ago
Alternatives and similar repositories for nanotail:
Users that are interested in nanotail are comparing it to the libraries listed below
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 8 months ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- RNAseq pipeline based on snakemake☆22Updated last year
- The Flexible Demultiplexer☆27Updated 3 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated 10 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆20Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆11Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆35Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆33Updated this week
- ☆53Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- Tutorial Website☆55Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆21Updated last month
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 5 months ago
- ☆33Updated last year