Tools for accessing open data sets published by the Allen Institute for Brain Sciences
☆15Jun 29, 2021Updated 4 years ago
Alternatives and similar repositories for open_dataset_tools
Users that are interested in open_dataset_tools are comparing it to the libraries listed below
Sorting:
- ☆13Jul 2, 2024Updated last year
- Tools for distributed alignment of massive images☆93Feb 22, 2026Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- CIVET Installer☆30Jan 29, 2022Updated 4 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆36Feb 12, 2026Updated 2 weeks ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Dec 31, 2023Updated 2 years ago
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago
- An open-source book on building better code for science using AI☆66Dec 31, 2025Updated 2 months ago
- Computational Anatomy Toolbox for SPM12 or SPM25☆48Updated this week
- GPU-based 3D non-rigid volumetric registration☆43Aug 26, 2025Updated 6 months ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- Analysis tools specific to the aiephys multipatch project.☆12Oct 23, 2025Updated 4 months ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 6 months ago
- Brain Connectivity Laboratory Webpage☆13Dec 4, 2024Updated last year
- Fast radial symmetry transform implemented in pure python.☆13Apr 27, 2019Updated 6 years ago
- A General Rodent MRI Skull-Stripping Tool Based on Multi-Center Data☆10Dec 7, 2024Updated last year
- ☆13Jun 15, 2024Updated last year
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆11Jul 25, 2024Updated last year
- ☆22Aug 17, 2025Updated 6 months ago
- Progression Models for Repeated Measures☆12Feb 19, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 3 months ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated last year
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆13Nov 6, 2023Updated 2 years ago
- A simple Python library to make CRUD process easier with Odoo External API☆14May 22, 2023Updated 2 years ago
- [Findings of ACL-2023] This is the official implementation of On the Difference of BERT-style and CLIP-style Text Encoders.☆14Jun 7, 2023Updated 2 years ago
- ☆18Nov 2, 2024Updated last year
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 6 years ago
- ☆13Apr 28, 2024Updated last year
- ☆13Jun 24, 2024Updated last year
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization☆13Sep 20, 2021Updated 4 years ago
- Install micromamba, and optionally create a base conda environment.☆10Apr 5, 2025Updated 10 months ago
- ☆11Jul 25, 2017Updated 8 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 2 months ago
- Web frontend for LDAP☆11Updated this week