OHDSI / KnowledgeBaseLinks
Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.
☆55Updated 7 years ago
Alternatives and similar repositories for KnowledgeBase
Users that are interested in KnowledgeBase are comparing it to the libraries listed below
Sorting:
- A near real-time named-entity recognizer☆62Updated 4 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated last year
- Python wraper for MetaMap☆173Updated 5 years ago
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- ☆76Updated last year
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated last week
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- ☆70Updated 3 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- ☆55Updated 5 years ago
- ☆152Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ☆94Updated 6 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 7 months ago
- ☆122Updated 7 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆104Updated 5 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆341Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆233Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆101Updated 3 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago