Alternatives and similar repositories for medknow

Users that are interested in medknow are comparing it to the libraries listed below

• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆27Updated last year
• jayded / evidence-inference
  Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…
  ☆65Updated 4 years ago
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆40Updated 5 years ago
• clinicalml / HealthKnowledgeGraph
  Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
  ☆102Updated 4 years ago
• Bin-Chen-Lab / metamap
  A short tutorial to map biomedical free-text into UMLS concepts using MetaMap
  ☆30Updated 2 years ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆49Updated 3 years ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• gmichalo / UmlsBERT
  ☆99Updated 3 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 7 months ago
• noc-lab / clinical_concept_extraction
  Clinical Concept Extraction with Contextual Word Embedding
  ☆40Updated 5 years ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆38Updated 6 years ago
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆130Updated 2 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• CrowdTruth / Medical-Relation-Extraction
  Crowdsourced ground truth for medical relation extraction.
  ☆69Updated 6 years ago
• acadTags / Explainable-Automated-Medical-Coding
  Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
  ☆62Updated 3 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated last month
• clips / clicr
  Machine reading comprehension on clinical case reports
  ☆149Updated last month
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆46Updated 4 years ago
• babylonhealth / medisim
  Medical Similarity Dataset creation from SNOMED
  ☆28Updated 3 years ago
• Franck-Dernoncourt / pubmed-rct
  PubMed 200k RCT dataset: a large dataset for sequential sentence classification.
  ☆198Updated last year
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆20Updated 2 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆61Updated 2 months ago
• stonkgs / stonkgs
  Multimodal Transformers for biomedical text and Knowledge Graph data
  ☆35Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 3 years ago
• dmis-lab / bioasq-biobert
  Pre-trained Language Model for Biomedical Question Answering
  ☆123Updated 2 years ago
• smitkiri / ehr-relation-extraction
  NER and Relation Extraction from Electronic Health Records (EHR).
  ☆89Updated 3 years ago
• BMDSoftware / neji
  Flexible and powerful platform for biomedical information extraction from text
  ☆39Updated 8 years ago
• ckbjimmy / clneg
  Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
  ☆21Updated 5 years ago