drgriffis / PyUMLSLinks
Python wrapper for UMLS REST API
☆10Updated 7 years ago
Alternatives and similar repositories for PyUMLS
Users that are interested in PyUMLS are comparing it to the libraries listed below
Sorting:
- Weakly supervised medical named entity classification☆72Updated 3 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 5 months ago
- A Serverless Text Annotation Tool for Corpus Development☆59Updated 11 months ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated 3 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Updated 4 years ago
- A rule-based Python module for spitting documents into sections.☆12Updated 5 years ago
- Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …☆25Updated 8 years ago
- ☆101Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71Updated 9 months ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Updated 2 years ago
- System for Medical Concept Extraction and Linking☆431Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆63Updated 3 years ago
- ☆18Updated 5 years ago
- Python wraper for MetaMap☆173Updated 5 years ago
- A near real-time named-entity recognizer☆63Updated last week
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 3 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 7 years ago
- BioMedICUS: A biomedical and clinical NLP engine.☆20Updated 3 months ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- ☆221Updated last year
- ☆153Updated 2 years ago
- Transformers for Clinical NLP☆27Updated 6 months ago
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆142Updated 2 months ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆90Updated 3 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago