jianlins / FastContextLinks
FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).
☆11Updated 4 years ago
Alternatives and similar repositories for FastContext
Users that are interested in FastContext are comparing it to the libraries listed below
Sorting:
- A near real-time named-entity recognizer☆62Updated 5 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆341Updated 4 years ago
- A fast dictionary-based approach for semantic annotation with approximate string matching algorithms☆15Updated 2 years ago
- ☆70Updated 3 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated 2 weeks ago
- Text annotation tool for team collaboration☆43Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- Reach Biomedical Information Extraction☆98Updated last year
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆105Updated 4 months ago
- Public release of the DeepPhe analytic software☆30Updated 3 weeks ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Semantic query and text mining tool☆21Updated 2 years ago
- ☆76Updated last year
- Fast, world class biomedical NER☆87Updated 9 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆197Updated last year
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆82Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Integrated OBO ontology store☆48Updated 2 months ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆136Updated last week
- ☆24Updated 5 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- BioGrakn Knowledge Graph☆185Updated 4 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year