jianlins / FastContext
FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).
☆11Updated 3 years ago
Alternatives and similar repositories for FastContext:
Users that are interested in FastContext are comparing it to the libraries listed below
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last week
- A near real-time named-entity recognizer☆59Updated 10 months ago
- Retrieve and process PubTator annotations☆44Updated last year
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Text annotation tool for team collaboration☆40Updated last year
- ☆66Updated 2 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 7 months ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- Semantic query and text mining tool☆22Updated last year
- mOWL: Machine Learning library with Ontologies☆64Updated 2 months ago
- Feature learning over RDF data and OWL ontologies☆45Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆81Updated last year
- The official SNOMED CT OWL Toolkit. OWL conversion, classification and authoring support.☆101Updated 2 months ago
- ☆14Updated last month
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated last week
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Automatically exported from code.google.com/p/ogms☆23Updated 2 years ago
- BERTMap: A BERT-Based Ontology Alignment System☆65Updated 11 months ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Transformers for Clinical NLP☆24Updated 2 months ago
- Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMC…☆11Updated 8 years ago
- ☆72Updated last year