HHS / uts-rest-api
A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API
☆172Updated 2 years ago
Alternatives and similar repositories for uts-rest-api:
Users that are interested in uts-rest-api are comparing it to the libraries listed below
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- Python wraper for MetaMap☆171Updated 4 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 7 months ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- A near real-time named-entity recognizer☆59Updated 10 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- ☆98Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated this week
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 8 months ago
- System for Medical Concept Extraction and Linking☆400Updated 8 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆325Updated 3 years ago
- Mapping the MIMIC-III database to the OMOP schema☆133Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- ☆53Updated 5 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated last month
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 4 months ago
- ☆90Updated 5 years ago
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 2 months ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆238Updated 2 weeks ago