Alternatives and similar repositories for NegBio:

Users that are interested in NegBio are comparing it to the libraries listed below

• bionlplab / negbio2
  High-performance tool for negation and uncertainty detection in radiology reports
  ☆15Updated 10 months ago
• yuhaozhang / summarize-radiology-findings
  Code and pretrained model for paper "Learning to Summarize Radiology Findings"
  ☆81Updated 6 years ago
• stanfordmlgroup / chexpert-labeler
  CheXpert NLP tool to extract observations from radiology reports.
  ☆377Updated 2 years ago
• MIT-LCP / mimic-cxr
  Code, documentation, and discussion around the MIMIC-CXR database
  ☆274Updated 4 years ago
• bionlplab / radtext
  Python Radiology Text Analysis System
  ☆13Updated last year
• gmichalo / UmlsBERT
  ☆97Updated 3 years ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆411Updated 2 years ago
• lsy3 / clinical-notes-diagnosis-dl-nlp
  ☆69Updated 3 years ago
• stanfordmlgroup / CheXbert
  Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
  ☆122Updated 10 months ago
• imonban / RadiologyReportEmbedding
  Intelligent Word Embeddings of Free-Text Radiology Reports
  ☆24Updated 6 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆170Updated 4 years ago
• umassbento / ehrbert
  A fine-tuned BERT using EHR notes.
  ☆14Updated 5 years ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆292Updated 3 years ago
• aisinai / rad-report-annotator
  ☆24Updated 2 years ago
• kormilitzin / med7
  ☆214Updated 3 months ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆136Updated 3 months ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆74Updated 2 years ago
• abachaa / VQA-Med-2019
  Visual Question Answering in the Medical Domain VQA-Med 2019
  ☆85Updated last year
• mmcdermott / chexpertplusplus
  Source implementation and pointer to pre-trained models for Chexpert++, a BERT-based approximation to CheXpert for radiology report label…
  ☆20Updated 4 years ago
• ncbi-nlp / BioWordVec
  ☆148Updated last year
• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆704Updated 4 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆322Updated 3 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆146Updated last year
• jamesmullenbach / caml-mimic
  multilabel classification of EHR notes
  ☆285Updated 4 years ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆132Updated last year
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆79Updated this week
• emir-munoz / amia-paper-template
  A basic AMIA (American Medical Informatics Association) style compliant LaTeX paper skeleton
  ☆19Updated 9 years ago
• asappresearch / clip
  ☆29Updated 3 years ago
• abachaa / MedQuAD
  Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
  ☆378Updated last year