ncbi-nlp / NegBio
High-performance tool for negation and uncertainty detection in radiology reports
☆162Updated last year
Alternatives and similar repositories for NegBio:
Users that are interested in NegBio are comparing it to the libraries listed below
- CheXpert NLP tool to extract observations from radiology reports.☆377Updated 2 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆16Updated 11 months ago
- Code and pretrained model for paper "Learning to Summarize Radiology Findings"☆81Updated 6 years ago
- Code, documentation, and discussion around the MIMIC-CXR database☆275Updated 4 years ago
- Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT☆123Updated 11 months ago
- ☆69Updated 3 years ago
- ☆98Updated 3 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆413Updated 2 years ago
- Intelligent Word Embeddings of Free-Text Radiology Reports☆24Updated 6 years ago
- ☆215Updated 4 months ago
- Python Radiology Text Analysis System☆13Updated last year
- Visual Question Answering in the Medical Domain VQA-Med 2019☆85Updated last year
- Python wraper for MetaMap☆171Updated 4 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- ☆151Updated last year
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- CL-inical EVE-nt R-ecognizer☆19Updated 8 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- Chronic Disease Prediction Using Medical Notes☆269Updated 5 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- BERT implementation for radiology full-text reports☆11Updated 4 years ago
- multilabel classification of EHR notes☆286Updated 4 years ago
- all scripts used in gatortron project☆116Updated last year
- ☆59Updated last year
- ☆29Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- Source implementation and pointer to pre-trained models for Chexpert++, a BERT-based approximation to CheXpert for radiology report label…☆20Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆293Updated 3 years ago