Alternatives and similar repositories for NegBio

Users that are interested in NegBio are comparing it to the libraries listed below

• yuhaozhang / summarize-radiology-findings
  Code and pretrained model for paper "Learning to Summarize Radiology Findings"
  ☆82Updated 6 years ago
• stanfordmlgroup / chexpert-labeler
  CheXpert NLP tool to extract observations from radiology reports.
  ☆385Updated 2 years ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆421Updated 2 years ago
• bionlplab / negbio2
  High-performance tool for negation and uncertainty detection in radiology reports
  ☆16Updated last year
• MIT-LCP / mimic-cxr
  Code, documentation, and discussion around the MIMIC-CXR database
  ☆282Updated 5 years ago
• gmichalo / UmlsBERT
  ☆98Updated 3 years ago
• umassbento / ehrbert
  A fine-tuned BERT using EHR notes.
  ☆14Updated 5 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆726Updated 4 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• kormilitzin / med7
  ☆218Updated 7 months ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆408Updated 11 months ago
• stanfordmlgroup / CheXbert
  Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
  ☆135Updated last year
• imonban / RadiologyReportEmbedding
  Intelligent Word Embeddings of Free-Text Radiology Reports
  ☆24Updated 6 years ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• lsy3 / clinical-notes-diagnosis-dl-nlp
  ☆70Updated 3 years ago
• stamang / CLEVER
  CL-inical EVE-nt R-ecognizer
  ☆19Updated 8 years ago
• McGill-NLP / medal
  Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…
  ☆274Updated last year
• bionlplab / radtext
  Python Radiology Text Analysis System
  ☆14Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆121Updated last year
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated 2 weeks ago
• asappresearch / clip
  ☆29Updated 3 years ago
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆503Updated last week
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆290Updated last year
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆95Updated 2 weeks ago
• mmcdermott / chexpertplusplus
  Source implementation and pointer to pre-trained models for Chexpert++, a BERT-based approximation to CheXpert for radiology report label…
  ☆20Updated 5 years ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆329Updated 3 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆573Updated 2 years ago