chb / py-umlsLinks
Basic Python 3 tools to interact with UMLS lexica
☆124Updated 6 years ago
Alternatives and similar repositories for py-umls
Users that are interested in py-umls are comparing it to the libraries listed below
Sorting:
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- ☆98Updated 2 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 3 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- Python wraper for MetaMap☆173Updated 5 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 5 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- System for Medical Concept Extraction and Linking☆423Updated last year
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆158Updated 2 years ago
- Represent SNOMED CT in a relational database☆83Updated 3 years ago
- Health NLP Examples☆89Updated 7 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆340Updated 4 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆248Updated 5 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 2 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated last year
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated 2 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Miscellaneous tools for clinical ML☆29Updated 8 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- A near real-time named-entity recognizer☆62Updated 4 months ago
- Clinical Pipeline Engine using Apache cTAKES☆24Updated 10 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Open or Easy Access Clinical Data Sources for Biomedical Research☆176Updated 8 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year