Basic Python 3 tools to interact with UMLS lexica
☆124Jan 10, 2019Updated 7 years ago
Alternatives and similar repositories for py-umls
Users that are interested in py-umls are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UMLS in Python with MongoDB.☆18Aug 5, 2026Updated last week
- System for Medical Concept Extraction and Linking☆452Aug 12, 2024Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆48Aug 13, 2019Updated 7 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆88Mar 26, 2026Updated 4 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆346Nov 9, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Aug 17, 2022Updated 3 years ago
- Python wraper for MetaMap☆172Jul 22, 2020Updated 6 years ago
- Python wrapper for UMLS REST API☆10Dec 17, 2018Updated 7 years ago
- Miscellaneous tools for clinical ML☆29Oct 21, 2017Updated 8 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- Supporting multi-center research requires combining data created in different data models; this community coordination project aims to pr…☆17Mar 27, 2020Updated 6 years ago
- A modern, lightweight medication sig parser.☆12Jan 21, 2025Updated last year
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Mar 5, 2024Updated 2 years ago
- Enhance SSR for Python☆14May 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HaVoc a simple REST API to quickly build smart health apps powered by health/biomedical vocabularies.☆72Aug 17, 2016Updated 9 years ago
- Machine Learning and Social Media Seminar☆14Dec 16, 2013Updated 12 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆31Sep 7, 2023Updated 2 years ago
- ☆11Apr 7, 2021Updated 5 years ago
- Visualization of electronic medical records or other sequence event data.☆93Mar 8, 2019Updated 7 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆55Mar 20, 2024Updated 2 years ago
- Represent SNOMED CT in a relational database☆83Nov 8, 2022Updated 3 years ago
- Representation of Clinical Practice Guideline Recommendations in FHIR☆19Jun 10, 2026Updated 2 months ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Mar 13, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An implementation of the SNOMED CT Expression Constraint Language.☆27Updated this week
- UMLS to SNOMED CT and ICD-10-CM mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED …☆16Feb 11, 2026Updated 6 months ago
- Python tools for standardizing drug names to generic names.☆23Jun 7, 2023Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- Library for clinical NLP with spaCy.☆673Jun 4, 2026Updated 2 months ago
- For icibm paper☆11Feb 23, 2017Updated 9 years ago
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- Computing term cooccurrence in MEDLINE☆18Apr 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Dec 17, 2017Updated 8 years ago
- Medical Concept Annotation Tool☆532Jul 25, 2025Updated last year
- Server side components to support electronic clinical quality measure calculation☆11Feb 28, 2017Updated 9 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆13Jan 29, 2021Updated 5 years ago
- Python ICD9 library☆13May 6, 2015Updated 11 years ago
- A near real-time named-entity recognizer☆66Aug 3, 2026Updated last week
- ☆14Jun 15, 2026Updated last month