caufieldjh / awesome-bioieLinks
π§« A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
β389Updated last year
Alternatives and similar repositories for awesome-bioie
Users that are interested in awesome-bioie are comparing it to the libraries listed below
Sorting:
- Medical Concept Annotation Toolβ508Updated last month
- Tools for curating biomedical training data for large-scale language modelingβ481Updated 8 months ago
- Repository for student projects within biomedical text mining from Lund Universityβ55Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).β577Updated 2 years ago
- β218Updated 8 months ago
- β152Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.β333Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithmsβ152Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-theβ¦β120Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medicβ¦β275Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text miningβ178Updated 3 years ago
- Awesome list of computational biology.β99Updated 9 months ago
- Medical Text Mining and Information Extraction with spaCyβ440Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.β297Updated 3 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)β61Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalizationβ171Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β425Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentencesβ595Updated 2 years ago
- Library for clinical NLP with spaCy.β590Updated last month
- Recognize bio-medical entities from a text corpusβ127Updated 2 years ago
- A curated list of ML|NLP resources for healthcare.β471Updated 2 years ago
- A curated list of awesome resources at the intersection of healthcare and AIβ66Updated last year
- Pre-trained Language Model for Biomedical Question Answeringβ123Updated 2 years ago
- a customzable pipeline for information extractionβ17Updated 3 months ago
- β41Updated 5 years ago
- β99Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERTβ29Updated 4 years ago
- PubMed PICO Element Detection Datasetβ58Updated 7 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization toolβ194Updated last year
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO frameworkβ46Updated 4 years ago