🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
☆431May 26, 2024Updated last year
Alternatives and similar repositories for awesome-bioie
Users that are interested in awesome-bioie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of web-based interactive biological data visualizations.☆226Apr 2, 2024Updated 2 years ago
- A curated list of host-parasite information☆58Aug 17, 2024Updated last year
- Awesome list of computational biology.☆129Apr 29, 2026Updated last week
- A curated list of awesome cytodata resources☆90Nov 15, 2023Updated 2 years ago
- A curated list of awesome Bioinformatics libraries and software.☆4,009Apr 7, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Find primary sources online and learn how to research history digitally.☆317Apr 25, 2026Updated 2 weeks ago
- A curated list of awesome inspectIT documentations and resources.☆25Dec 6, 2020Updated 5 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆592Mar 25, 2023Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆52Mar 30, 2026Updated last month
- Curated list of awesome open source healthcare software, libraries, tools and resources.☆3,772Jan 28, 2026Updated 3 months ago
- A curated list of awesome neuroscience libraries, software and any content related to the domain.☆1,603Oct 24, 2024Updated last year
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆15Aug 23, 2022Updated 3 years ago
- A curated list of awesome resources at the intersection of healthcare and AI☆73Sep 22, 2023Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆498Dec 9, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- A list of schools and researchers in computational neuroscience☆936Aug 2, 2024Updated last year
- A curated list of awesome tools, demos and resources to go beyond LaTeX☆941Mar 6, 2026Updated 2 months ago
- ☆11Oct 22, 2018Updated 7 years ago
- A curated list of Cheminformatics libraries and software.☆863Mar 15, 2024Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,947Dec 4, 2025Updated 5 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- ☆18Oct 30, 2020Updated 5 years ago
- Curated (meta)list of resources for Biology.☆440Jan 15, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Medical Concept Annotation Tool☆530Jul 25, 2025Updated 9 months ago
- LLM-driven curation assist tool☆107Oct 20, 2025Updated 6 months ago
- init☆13Dec 4, 2024Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆204Mar 28, 2024Updated 2 years ago
- Medical Text Mining and Information Extraction with spaCy☆437Nov 1, 2022Updated 3 years ago
- ☆223Dec 11, 2024Updated last year
- Domain-specific BERT representation for Named Entity Recognition of lab protocol☆29Dec 25, 2020Updated 5 years ago
- ☆13Oct 20, 2022Updated 3 years ago
- A project for implementing ML and NLP papers☆13May 22, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Oct 10, 2020Updated 5 years ago
- Network Embedding All the Things☆18Oct 4, 2022Updated 3 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆31Sep 7, 2023Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆614Aug 15, 2023Updated 2 years ago
- 😎 A curated list of resources related to calculators!☆247Mar 21, 2026Updated last month
- ☆15Aug 24, 2022Updated 3 years ago
- Delightful Markdown stuff.☆924Aug 21, 2024Updated last year