🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
☆427May 26, 2024Updated last year
Alternatives and similar repositories for awesome-bioie
Users that are interested in awesome-bioie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of web-based interactive biological data visualizations.☆224Apr 2, 2024Updated 2 years ago
- A curated list of host-parasite information☆56Aug 17, 2024Updated last year
- Find primary sources online and learn how to research history digitally.☆310Updated this week
- A curated list of awesome inspectIT documentations and resources.☆25Dec 6, 2020Updated 5 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆589Mar 25, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Grounding of biomedical named entities with contextual disambiguation☆50Mar 30, 2026Updated 2 weeks ago
- A curated list of awesome neuroscience libraries, software and any content related to the domain.☆1,583Oct 24, 2024Updated last year
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆14Aug 23, 2022Updated 3 years ago
- A curated list of awesome resources at the intersection of healthcare and AI☆72Sep 22, 2023Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆496Dec 9, 2024Updated last year
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- A list of schools and researchers in computational neuroscience☆926Aug 2, 2024Updated last year
- A curated list of awesome tools, demos and resources to go beyond LaTeX☆934Mar 6, 2026Updated last month
- ☆11Oct 22, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A curated list of Cheminformatics libraries and software.☆854Mar 15, 2024Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,940Dec 4, 2025Updated 4 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- ☆18Oct 30, 2020Updated 5 years ago
- Curated (meta)list of resources for Biology.☆434Jan 15, 2024Updated 2 years ago
- LLM-driven curation assist tool☆105Oct 20, 2025Updated 5 months ago
- Medical Concept Annotation Tool☆528Jul 25, 2025Updated 8 months ago
- A curated list of awesome ponyfills for writing cross-platform and cross-browser code.☆63Oct 21, 2020Updated 5 years ago
- init☆13Dec 4, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆203Mar 28, 2024Updated 2 years ago
- Medical Text Mining and Information Extraction with spaCy☆437Nov 1, 2022Updated 3 years ago
- ☆223Dec 11, 2024Updated last year
- Domain-specific BERT representation for Named Entity Recognition of lab protocol☆29Dec 25, 2020Updated 5 years ago
- A project for implementing ML and NLP papers☆13May 22, 2020Updated 5 years ago
- BioBTree v2: An MCP-enabled biomedical graph database unifying 50+ datasets.☆16Apr 5, 2026Updated 2 weeks ago
- ☆19Oct 10, 2020Updated 5 years ago
- Network Embedding All the Things☆18Oct 4, 2022Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆612Aug 15, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆15Aug 24, 2022Updated 3 years ago
- Delightful Markdown stuff.☆918Aug 21, 2024Updated last year
- A comprehensive reference for all topics related to Natural Language Processing☆2,040Oct 12, 2025Updated 6 months ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆91Mar 16, 2022Updated 4 years ago
- 📖 A curated list of awesome resources dedicated to Relation Extraction, one of the most important tasks in Natural Language Processing (…☆1,226Jan 27, 2022Updated 4 years ago
- 📗Resources to dive into the world of social enterprises 🌼☆130Dec 23, 2024Updated last year
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago