unmtransinfo / ProteinGraphMLLinks
Protein Graph in Python for MetaPath-ML and more.
☆19Updated 3 weeks ago
Alternatives and similar repositories for ProteinGraphML
Users that are interested in ProteinGraphML are comparing it to the libraries listed below
Sorting:
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆22Updated 4 years ago
- ☆19Updated 5 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated last year
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆33Updated last year
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated last year
- ☆67Updated 2 years ago
- Code to build the Target Central Resource Database (TCRD).☆10Updated 3 years ago
- Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations☆29Updated last year
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆39Updated 2 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated this week
- Unsupervised neural network for learning embeddings of GO terms.☆18Updated 3 years ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆72Updated 2 years ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆19Updated 2 years ago
- 🪝 What's the latest version for each database?☆27Updated this week
- Large language models as universal biomedical simulators☆19Updated last year
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆17Updated 3 years ago
- ☆47Updated 7 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 5 months ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated this week
- Method for drug repurposing from knowledge graphs and literature☆35Updated 4 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- ☆36Updated last year
- Python client for the Open Targets REST API at targetvalidation.org☆25Updated 4 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 4 years ago