HazyResearch / medical-ned-integration
Cross-domain data integration for named entity disambiguation in biomedical text
☆11Updated 3 years ago
Alternatives and similar repositories for medical-ned-integration:
Users that are interested in medical-ned-integration are comparing it to the libraries listed below
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- Using Huggingface to generate relation expressions☆15Updated 4 years ago
- Biomedical Entity Linking Benchmark☆12Updated 4 months ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆56Updated 2 years ago
- ☆17Updated 4 years ago
- Github repo for the Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification, code and data | Paper: https://ar…☆14Updated 2 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)☆17Updated 2 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last month
- Codes for paper: Mixture-of-Partitions: Infusing Large Biomedical Knowledge Graphs into BERT☆33Updated 2 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆63Updated 10 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆27Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Using pretrained language models for biomedical knowledge graph completion.☆46Updated 3 years ago
- ☆24Updated 3 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Source Code for ACL 2020 paper, "Rationalizing Medical Relation Prediction from Corpus-level Statistics"☆12Updated 4 years ago
- BioELECTRA☆50Updated 3 years ago
- This repository lists papers, codes, and datasets in Biomedical Text Summarisation based on PLM☆23Updated 2 years ago
- ☆67Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆29Updated last year
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- ☆25Updated 2 years ago
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆14Updated 2 years ago
- CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering☆22Updated 4 years ago