shreyashub / BioFLAIR
BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks
☆41Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for BioFLAIR
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- Repository used to collect biomedical corpus on the Internet!☆31Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 3 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 4 years ago
- BioELECTRA☆51Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year
- BioBert Pytorch☆116Updated last year
- Corpus of Online Medical EnTities: the cometA corpus☆48Updated 6 months ago
- Python library for converting between BioNLP formats☆20Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Updated 9 months ago
- Multitask Learning with Pretrained Transformers☆40Updated 3 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆133Updated 3 months ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019☆51Updated last year
- ☆70Updated 11 months ago
- ☆26Updated last year
- Joint sentence classification-Tensorflow☆32Updated 6 years ago
- Pre-trained Language Model for Biomedical Question Answering☆122Updated last year