shreyashub / BioFLAIR
BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks
☆41Updated 4 years ago
Alternatives and similar repositories for BioFLAIR:
Users that are interested in BioFLAIR are comparing it to the libraries listed below
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- BioBert Pytorch☆116Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆132Updated 6 months ago
- BioELECTRA☆51Updated 3 years ago
- Python library for converting between BioNLP formats☆20Updated last year
- Pre-trained Language Model for Biomedical Question Answering☆122Updated last year
- ☆71Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Updated 11 months ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- ☆35Updated 4 years ago
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.☆24Updated 6 years ago
- ☆91Updated 5 years ago
- Joint sentence classification-Tensorflow☆33Updated 6 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Relation Extraction with Semeval 2010 data, i2b2 2010 VA challenge classification data and DDI extraction data.☆19Updated 5 years ago
- Multitask Learning with Pretrained Transformers☆39Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 3 years ago