☆50May 29, 2022Updated 4 years ago
Alternatives and similar repositories for BERE
Users that are interested in BERE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official Implementation for "Can NLI Provide Proper Indirect Supervision for Low-resource Biomedical Relation Extraction?" ACL 2023☆15Jun 17, 2023Updated 2 years ago
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Mar 3, 2021Updated 5 years ago
- ☆20May 25, 2020Updated 6 years ago
- Medical Relations and Entities Extraction☆37Jun 21, 2022Updated 3 years ago
- Three-dimensional force fields fingerprints☆27Jan 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Relation Extraction with Semeval 2010 data, i2b2 2010 VA challenge classification data and DDI extraction data.☆19Jul 29, 2019Updated 6 years ago
- This is the offical code of the paper "Towards Large-scale Chemical Reaction Image Parsing via a Multimodal Large Language Model"☆46Dec 12, 2025Updated 6 months ago
- Algorithms for prediction of drug-target interactions via computational (chemogenomic) methods☆48Apr 26, 2019Updated 7 years ago
- Datasets for Drug Discovery and Development☆10Aug 22, 2020Updated 5 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 10 years ago
- ☆32Jun 26, 2023Updated 2 years ago
- Deep learning to solve RNA design puzzles☆20Feb 4, 2025Updated last year
- EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information☆20Mar 6, 2023Updated 3 years ago
- Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies☆15Feb 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official code repo for the paper "ChemToolAgent: The Impact of Tools on Language Agents for Chemistry Problem Solving" (previously "Tooli…☆19Jun 7, 2025Updated last year
- This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).☆201Feb 23, 2021Updated 5 years ago
- ☆31Feb 23, 2024Updated 2 years ago
- ☆24Mar 11, 2023Updated 3 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆20Mar 30, 2019Updated 7 years ago
- ☆13May 21, 2023Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆57May 26, 2023Updated 3 years ago
- Machine learning notebooks and code used for demonstration purposes☆24Feb 17, 2021Updated 5 years ago
- ☆67Jan 29, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reimplementation of Segler et al's Template Relevance Network (NeuralSym) in their seminal Nature publication☆37Sep 1, 2022Updated 3 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆31Mar 1, 2017Updated 9 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- Graphormer-IR is an extension of the Graphormer framework, specifically to perform predictions of infrared spectra using only chemical st…☆15May 16, 2025Updated last year
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆102Jan 27, 2022Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆37Sep 26, 2020Updated 5 years ago
- ☆13Jul 24, 2024Updated last year
- Python toolkit for resolving chemical schematic diagrams.☆44Apr 4, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 4 years ago
- Active learning☆29Dec 17, 2020Updated 5 years ago
- ☆15Jul 14, 2022Updated 3 years ago
- Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bi…☆231Apr 14, 2020Updated 6 years ago
- Repository for the EMNLP 2023 Demo Paper "Reaction Miner: An Integrated System for Chemical Reaction Extraction from Textual Data"☆19Jan 27, 2025Updated last year
- ☆12Jun 5, 2026Updated last week