☆50May 29, 2022Updated 4 years ago
Alternatives and similar repositories for BERE
Users that are interested in BERE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "End-…☆90Feb 14, 2020Updated 6 years ago
- Official Implementation for "Can NLI Provide Proper Indirect Supervision for Low-resource Biomedical Relation Extraction?" ACL 2023☆15Jun 17, 2023Updated 3 years ago
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Mar 3, 2021Updated 5 years ago
- ☆20May 25, 2020Updated 6 years ago
- Medical Relations and Entities Extraction☆37Jun 21, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Relation Extraction with Semeval 2010 data, i2b2 2010 VA challenge classification data and DDI extraction data.☆19Jul 29, 2019Updated 7 years ago
- EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information☆20Mar 6, 2023Updated 3 years ago
- Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies☆15Feb 15, 2023Updated 3 years ago
- Three-dimensional force fields fingerprints☆27Jan 11, 2022Updated 4 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 10 years ago
- Deep learning to solve RNA design puzzles☆20Feb 4, 2025Updated last year
- This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).☆201Feb 23, 2021Updated 5 years ago
- Official code repo for the paper "ChemToolAgent: The Impact of Tools on Language Agents for Chemistry Problem Solving" (previously "Tooli…☆20Jun 7, 2025Updated last year
- ☆31Feb 23, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is the offical code of the paper "Towards Large-scale Chemical Reaction Image Parsing via a Multimodal Large Language Model"☆50Dec 12, 2025Updated 10 months ago
- PyTorch implementation of the paper "NestE: Modeling Nested Relational Structures for Knowledge Graph Reasoning" (AAAI'24)☆14Jul 5, 2024Updated 2 years ago
- CoCoScore: context-aware co-occurrence scores for text mining applications☆20Mar 30, 2019Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆32Mar 1, 2017Updated 9 years ago
- Machine learning notebooks and code used for demonstration purposes☆24Feb 17, 2021Updated 5 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- ☆13May 21, 2023Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆56May 26, 2023Updated 3 years ago
- Visualizing the space of chemical reactions with the parametric (learnable) t-SNE.☆16May 5, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Aug 5, 2020Updated 6 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- Python toolkit for resolving chemical schematic diagrams.☆46Apr 4, 2020Updated 6 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆102Jan 27, 2022Updated 4 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 4 years ago
- Active learning☆28Dec 17, 2020Updated 5 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- ☆15Jul 14, 2022Updated 4 years ago
- ☆39Nov 16, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆65Nov 21, 2019Updated 6 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- ☆28Jul 3, 2024Updated 2 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- COVID-19 corpus with annotated biomedical entities.☆11Jun 2, 2021Updated 5 years ago
- 医学问诊问答,NER,关系抽取☆14May 28, 2020Updated 6 years ago