haiya1994 / BERELinks
☆50Updated 3 years ago
Alternatives and similar repositories for BERE
Users that are interested in BERE are comparing it to the libraries listed below
Sorting:
- ☆58Updated 5 years ago
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Updated 4 years ago
- Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network☆96Updated 6 years ago
- A Deep Learning Model for Protein Function Prediction☆18Updated 5 years ago
- This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).☆201Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Updated 4 years ago
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆90Updated 2 years ago
- ☆232Updated 8 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆88Updated last year
- Source code for TKDE'22 "KG-MTL: Knowledge Graph Enhanced Multi-Task Learning for Molecular Interaction"☆28Updated 3 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated last year
- A Knowledge Graph for Relational Learning On Biological Data☆106Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- ☆17Updated 4 years ago
- An end-to-end heterogeneous graph representation learning-based framework for drug-target interaction prediction☆30Updated 3 years ago
- Detecting drug-drug interaction (DDI) has become a vital part of public health safety. This project is an implementation of NLP based app…☆17Updated 8 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆28Updated 3 years ago
- Joint Biomedical Entity and Relation Extraction with Knowledge-Enhanced Collective Inference☆41Updated 3 years ago
- Predicting Drug Protein Interaction using Quasi-Visual Question Answering System☆125Updated last year
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆13Updated 5 years ago
- PyTorch Implementation of BioBERT☆345Updated 2 years ago
- Source Code for IJCAI'20 "KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction"☆92Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 5 years ago
- ☆80Updated last year
- Repository for student projects within biomedical text mining from Lund University☆56Updated 2 years ago
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Updated 2 years ago
- Code and Data for the paper: Molecular Contrastive Learning with Chemical Element Knowledge Graph [AAAI 2022]☆90Updated last year
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆106Updated 2 years ago
- ☆11Updated 5 years ago
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆83Updated 3 years ago