Alternatives and similar repositories for Awesome-Genomic-LLMs

Users that are interested in Awesome-Genomic-LLMs are comparing it to the libraries listed below

• chenhcs / DIFFUSE
  Deep learning based prediction of IsoForm FUnctions from Sequences and Expression
  ☆15Updated 3 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆36Updated last month
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆12Updated 3 weeks ago
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆36Updated 10 months ago
• astrazeneca-cgr-publications / milton-release
  MILTON: Disease prediction with biomarkers and augmented PheWAS analyses
  ☆35Updated 9 months ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• etirouthier / keras_dna
  ☆23Updated 4 years ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 8 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆23Updated 3 weeks ago
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆25Updated last month
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆22Updated 2 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• kiharalab / GO2Sum
  GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…
  ☆16Updated last year
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆3Updated last year
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆17Updated 9 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆32Updated 2 years ago
• kad-ecoli / python_scripts
  scripts for parsing PDB, fasta, and GO
  ☆16Updated 3 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated last week
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• BiomedSciAI / Geno4SD
  An python omics data toolkit for the analysis across biological scales
  ☆11Updated last year
• CMRI-ProCan / DeePathNet
  ☆11Updated 8 months ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 2 years ago
• ml-jku / DNA-xLSTM
  ☆14Updated 7 months ago