A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive collection of materials to facilitate research, learning, and development in the field of Genomic LLMs.
☆18Aug 7, 2024Updated last year
Alternatives and similar repositories for Awesome-Genomic-LLMs
Users that are interested in Awesome-Genomic-LLMs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Python package for analyzing and visualizing iModulons☆15Mar 16, 2026Updated last month
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated last year
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- 🍊🔬 Bioinformatics add-on for Orange3☆24Feb 17, 2026Updated 2 months ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- Open source library for implementing a contextual firewall for LLM based apps.☆15Mar 26, 2026Updated 3 weeks ago
- Effect of tokenization on transformers for biological sequence☆22Dec 31, 2025Updated 3 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Jun 5, 2022Updated 3 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 10 months ago
- this repository is a best example of agentic news team which coordinate and gets the news according to each agent.☆14Dec 14, 2024Updated last year
- Launcher shortcuts for classic Jupyter Notebook & JupyterLab☆16Nov 25, 2024Updated last year
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- ☆27Nov 20, 2025Updated 4 months ago
- Software program for generating synthetic datasets for genotypes and phenotypes☆18Jun 1, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data☆19Aug 4, 2020Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- Kedro Snowflake / Snowpark plugin☆14Jul 19, 2024Updated last year
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- PyTorch Implementation of GPT-2☆32Sep 4, 2024Updated last year
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆30Mar 27, 2026Updated 3 weeks ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- This repository contains a curated collection of notebooks and lightweight applications demonstrating Generative AI in financial analysis…☆17Feb 21, 2025Updated last year
- Genetic Association Analysis Under Complex Survey Sampling☆13Nov 13, 2019Updated 6 years ago
- Apache Spark Connect for Rust☆28Feb 13, 2026Updated 2 months ago