parallel c prinseq
☆21Aug 10, 2022Updated 3 years ago
Alternatives and similar repositories for PRINSEQ-plus-plus
Users that are interested in PRINSEQ-plus-plus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 7 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 7 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 2 years ago
- ☆16Apr 6, 2023Updated 3 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- ☆17Oct 3, 2022Updated 3 years ago
- Yet Another Chimeric Read Detector☆86Nov 7, 2024Updated last year
- ☆22Sep 12, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BWA-MEME: Faster BWA-MEM2 using learned-index☆137Mar 25, 2026Updated last month
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- ☆11Sep 11, 2020Updated 5 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated last week
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- ☆19Jul 22, 2025Updated 9 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆25Aug 20, 2020Updated 5 years ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assessing the quality of genomes using busco☆14Mar 23, 2023Updated 3 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- MicrobeRX☆17Aug 11, 2025Updated 8 months ago
- ☆13Jul 21, 2025Updated 9 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆61Apr 29, 2025Updated last year
- Updated DANPOS2 to work with python3☆24Feb 25, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Jul 12, 2022Updated 3 years ago
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆15Nov 6, 2024Updated last year
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- Share my knowledge, share my life.☆12Apr 5, 2018Updated 8 years ago