Speedrunning PLM pretraining
☆14Sep 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for SpeedrunningPLMs
Users that are interested in SpeedrunningPLMs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Mar 1, 2025Updated last year
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- Easy to use and efficient implementations of Protein Language Models☆59Oct 9, 2026Updated last week
- ☆17Jun 15, 2022Updated 4 years ago
- ☆29Oct 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DataHack Challenges - Challenges offered during our hackathon by top data companies.☆12Jan 28, 2020Updated 6 years ago
- Work on designing a graph co-attention algorithm.☆18Jul 22, 2023Updated 3 years ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- Transductive Active Learning with Application to Safe Bayesian Optimization☆11Mar 5, 2025Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆87Sep 11, 2025Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆46Apr 11, 2024Updated 2 years ago
- Block Diffusion Trainer☆16Jul 10, 2025Updated last year
- RXN for biochemical reactions☆77Oct 18, 2022Updated 4 years ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Adapting protein language models for structure-conditioned design☆43Aug 5, 2024Updated 2 years ago
- ☆26Nov 6, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- Efficient implementatin of ESM family.☆88Sep 9, 2025Updated last year
- Reaction SMILES-AA mapping via language modelling☆29Sep 11, 2024Updated 2 years ago
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25Jun 10, 2026Updated 4 months ago
- Benchmark structured generation libraries☆31Oct 25, 2024Updated last year
- ☆33Dec 12, 2024Updated last year
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 8 months ago
- ☆22Nov 13, 2023Updated 2 years ago
- ☆16Jun 14, 2024Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 6 months ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆18Nov 24, 2024Updated last year
- ☆97Feb 11, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Effect of tokenization on transformers for biological sequence☆24Dec 31, 2025Updated 9 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- Official implementation of "BERTs are Generative In-Context Learners"☆32Mar 14, 2025Updated last year
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆18Jul 27, 2026Updated 2 months ago
- ☆14Mar 6, 2022Updated 4 years ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 7 months ago