AdamaJava / adamajavaLinks
☆17Updated last week
Alternatives and similar repositories for adamajava
Users that are interested in adamajava are comparing it to the libraries listed below
Sorting:
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- ☆38Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- ☆25Updated last year
- ☆53Updated 2 years ago
- QDNAseq bin annotation for hg38☆16Updated 6 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- a bucket of bioinformatics scripts☆13Updated last week
- ☆23Updated 9 months ago
- A software for calculating telomere length☆71Updated 6 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- Burden testing against public controls☆50Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆46Updated 5 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago