AdamaJava / adamajavaLinks
☆17Updated 3 months ago
Alternatives and similar repositories for adamajava
Users that are interested in adamajava are comparing it to the libraries listed below
Sorting:
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- ☆39Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- a bucket of bioinformatics scripts☆13Updated this week
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Genomic Association Tester☆35Updated 2 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- ☆46Updated 6 years ago
- ☆26Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆22Updated 2 months ago
- Burden testing against public controls☆50Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Script used to identify de novo variants from sequencing data.☆11Updated 8 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 7 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago