A python package for optimizing processing pipelines using statistical design of experiments (DoE).
☆25Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for doepipeline
Users that are interested in doepipeline are comparing it to the libraries listed below
Sorting:
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- Get the list of all the stokcs, etf, indices, mutual funds, Exchange-Traded Notes (ETN) listed on the New York Stock Exchange (NYSE), Nas…☆10Jan 9, 2022Updated 4 years ago
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆25Jul 23, 2020Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- Awesome resources related to Galaxy project☆11Nov 23, 2024Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis