A python package for optimizing processing pipelines using statistical design of experiments (DoE).
☆25Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for doepipeline
Users that are interested in doepipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jul 23, 2020Updated 5 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆16Apr 28, 2026Updated last week
- Demonstrating best practices for bioinformatics command line tools☆24Jul 23, 2020Updated 5 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 6 months ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 6 months ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆21Apr 27, 2026Updated last week
- Bioinformatics Open Source Sequence machine☆32Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆36Jul 5, 2021Updated 4 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 11 months ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A file watcher written in Rust☆11Dec 1, 2024Updated last year
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago