clicumu / doepipelineLinks
A python package for optimizing processing pipelines using statistical design of experiments (DoE).
☆24Updated 3 years ago
Alternatives and similar repositories for doepipeline
Users that are interested in doepipeline are comparing it to the libraries listed below
Sorting:
- Plot tanglegrams from two dendrograms☆20Updated 5 months ago
- ☆21Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- SQL support plugin for Nextflow☆32Updated last week
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- Minotour API, web and client code☆30Updated 2 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Updated 5 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Updated 8 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated last month
- ☆13Updated 7 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Convert vcf in parquet☆27Updated 7 months ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- Align sequences and then parse features.☆18Updated 4 months ago
- map Illumina metagenomes to genomes!☆39Updated this week
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- A comprehensive and intelligent clinical phasing tool☆14Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year