clicumu / doepipelineLinks
A python package for optimizing processing pipelines using statistical design of experiments (DoE).
☆24Updated 3 years ago
Alternatives and similar repositories for doepipeline
Users that are interested in doepipeline are comparing it to the libraries listed below
Sorting:
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Align sequences and then parse features.☆17Updated last month
- SQL support plugin for Nextflow☆32Updated 2 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Updated 2 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Updated 13 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- Lecture on viral phylodynamics☆12Updated 4 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Sequencing analysis pipeline☆14Updated 5 months ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- 🧬 Viral genome reference alignment☆12Updated 4 years ago
- SRA python tools☆11Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Build and maintain multiple custom conda environments all in one place.☆39Updated 11 months ago
- TreeSwift: Fast tree module for Python 3☆84Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Docker containers for bioinformatics with a small footprint☆23Updated 2 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Flexible omics pipeline☆17Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 4 months ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated last month