A python package for optimizing processing pipelines using statistical design of experiments (DoE).
☆25Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for doepipeline
Users that are interested in doepipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python experiment management toolset☆16Sep 23, 2019Updated 6 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- A PyTorch annotated replication of the paper: https://arxiv.org/abs/2006.10637☆20Nov 20, 2020Updated 5 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Python package for flexible generation of D-optimal experimental designs☆12Jun 6, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- Power system generation scheduling and co-simulation with dynamics.☆24Dec 23, 2025Updated 3 months ago
- ☆44Nov 20, 2021Updated 4 years ago
- Design of experiments for Python☆59Feb 9, 2026Updated 2 months ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆16Updated this week
- Design of experiments for Python☆165Oct 13, 2023Updated 2 years ago
- ☆35Oct 22, 2020Updated 5 years ago
- repository for the Sparse Grids Matlab Kit source code. Full info on https://sites.google.com/view/sparse-grids-kit☆19May 7, 2024Updated last year
- Demonstrating best practices for bioinformatics command line tools☆24Jul 23, 2020Updated 5 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 5 months ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 6 months ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆21Apr 11, 2026Updated last week
- Bioinformatics Open Source Sequence machine☆32Apr 12, 2026Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated last month
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 10 months ago
- ☆30Nov 15, 2021Updated 4 years ago